* using log directory 'd:/Rcompile/CRANpkg/local/4.5/cg.Rcheck'
* using R Under development (unstable) (2024-07-14 r86899 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'cg/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'cg' version '1.0-3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cg' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s] OK
* checking whether the package can be loaded with stated dependencies ... [3s] OK
* checking whether the package can be unloaded cleanly ... [3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s] OK
* checking whether the namespace can be unloaded cleanly ... [4s] OK
* checking loading without being on the library search path ... [4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s] OK
* checking Rd files ... [3s] NOTE
checkRd: (-1) comparisonsTable.cgOneFactorFit.Rd:47: Lost braces
    47 |         call (see {\dots } section below.)
       |                   ^
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  anorexiaFT.Rd: anorexia
  boxplot.cgOneFactorData.Rd: survfit
  comparisonsGraph.cgOneFactorComparisonsTable.Rd: panel.text
  comparisonsTable.cgOneFactorFit.Rd: rlm
  comparisonsTable.cgPairedDifferenceFit.Rd: rlm
  comparisonsgraph.Rd: panel.text
  descriptiveTable.cgOneFactorData.Rd: survfit
  downweightedTable.Rd: rlm
  downweightedTable.cgOneFactorFit.Rd: rlm
  downweightedTable.cgPairedDifferenceFit.Rd: rlm
  fit.cgOneFactorData.Rd: rlm, survreg, gls
  fit.cgPairedDifferenceData.Rd: rlm
  kmGraph.Rd: label
  kmGraph.cgOneFactorData.Rd: label
  prepareCGOneFactorData.Rd: Surv, survreg, logtrans
  print.cgOneFactorComparisonsTable.Rd: rlm
  print.cgOneFactorFit.Rd: rlm
  print.cgOneFactorGlobalTest.Rd: rlm
  print.cgOneFactorGrpSummaryTable.Rd: rlm
  print.cgOneFactorSampleSizeTable.Rd: rlm
  print.cgPairedDifferenceComparisonsTable.Rd: rlm
  print.cgPairedDifferenceFit.Rd: rlm
  summary.cgOneFactorFit.Rd: rlm
  summary.cgPairedDifferenceFit.Rd: rlm
  varianceGraph.cgOneFactorFit.Rd: vgam
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [46s] OK
* checking PDF version of manual ... [37s] OK
* checking HTML version of manual ... [24s] OK
* DONE
Status: 2 NOTEs