* using log directory 'd:/Rcompile/CRANpkg/local/4.5/umx.Rcheck' * using R Under development (unstable) (2024-07-12 r86893 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'umx/DESCRIPTION' ... OK * this is package 'umx' version '4.20.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'umx' can be installed ... OK * checking installed package size ... NOTE installed size is 6.0Mb sub-directories of 1Mb or more: R 1.0Mb help 4.4Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [3s] OK * checking loading without being on the library search path ... [3s] OK * checking whether startup messages can be suppressed ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [42s] OK * checking Rd files ... [9s] OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: RMSEA.MxModel.Rd: mxModel RMSEA.summary.mxmodel.Rd: mxModel extractAIC.MxModel.Rd: mxModel plot.MxLISRELModel.Rd: mxModel plot.MxModel.Rd: DiagrammeR, mxModel residuals.MxModel.Rd: mxModel tmx_is.identified.Rd: mxCheckIdentification umx-deprecated.Rd: mxEvalByName, mxTryHard umxACE.Rd: mxModel umxACEcov.Rd: mxModel umxACEv.Rd: mxModel umxAPA.Rd: lme umxAlgebra.Rd: mxAlgebra umxBrownie.Rd: omxBrownie umxCI.Rd: mxModel, mxCI umxCI_boot.Rd: mxModel umxCLPM.Rd: mxModel umxCP.Rd: mxModel umxCompare.Rd: mxModel, mxCompare umxConfint.Rd: mxModel, mxCI, mxRun umxDiagnose.Rd: mxModel umxDoC.Rd: mxModel umxEFA.Rd: mxModel, mxFactorScores umxEquate.Rd: mxModel umxExpCov.Rd: mxModel umxExpMeans.Rd: mxModel umxFactor.Rd: mxFactor umxFactorScores.Rd: mxFactorScores umxFitIndices.Rd: mxModel, summary.MxModel umxFixAll.Rd: mxModel umxGetParameters.Rd: omxGetParameters, mxModel umxGxE.Rd: mxModel umxGxEbiv.Rd: mxModel umxIP.Rd: mxModel umxJiggle.Rd: mxMatrix umxMI.Rd: mxModel, mxMI umxMRDoC.Rd: mxModel umxMatrix.Rd: mxMatrix umxMatrixFree.Rd: mxMatrix umxModel.Rd: mxModel umxModelNames.Rd: mxModel, mxRename umxModify.Rd: mxModel, mxRun umxParameters.Rd: mxModel umxPath.Rd: mxPath umxPlotACE.Rd: mxModel umxPlotACEcov.Rd: mxModel umxPlotCP.Rd: mxModel umxPlotSexLim.Rd: mxModel umxRAM.Rd: mxData, mxModel umxReduce.Rd: mxModel umxReduceACE.Rd: mxModel umxRun.Rd: mxRun, mxModel, mxData umxSetParameters.Rd: mxModel, omxAssignFirstParameters umxSexLim.Rd: mxModel umxSimplex.Rd: mxModel umxSummary.MxModel.Rd: mxModel, mxCheckIdentification umxSummary.Rd: mxModel umxSummaryACE.Rd: mxModel umxSummaryACEcov.Rd: mxModel umxSummaryACEv.Rd: mxModel umxSummaryCP.Rd: mxModel umxSummaryDoC.Rd: mxModel umxSummaryGxE.Rd: mxModel umxSummaryGxEbiv.Rd: mxModel umxSummaryIP.Rd: mxModel umxSummarySexLim.Rd: mxModel umxSummarySimplex.Rd: mxModel umxSuperModel.Rd: mxFitFunctionMultigroup, mxModel umxTwoStage.Rd: mxModel umxUnexplainedCausalNexus.Rd: mxCheckIdentification, mxCompare umxVersion.Rd: mxModel umx_cont_2_quantiles.Rd: mxFactor umx_has_CIs.Rd: mxModel umx_has_been_run.Rd: mxModel umx_has_means.Rd: mxModel umx_is_MxMatrix.Rd: mxMatrix umx_is_MxModel.Rd: mxModel umx_is_RAM.Rd: mxModel umx_is_endogenous.Rd: mxModel umx_is_exogenous.Rd: mxModel umx_is_ordered.Rd: mxData umx_rot.Rd: mxModel umx_round.Rd: mxModel umx_standardize.Rd: mxModel umx_string_to_algebra.Rd: mxAlgebra umx_time.Rd: mxModel umx_var.Rd: mxModel xmuLabel.Rd: mxModel, mxPath, mxMatrix, omxSetParameters xmuLabel_MATRIX_Model.Rd: mxModel xmuLabel_Matrix.Rd: mxMatrix xmuLabel_RAM_Model.Rd: mxModel xmuMI.Rd: mxModel xmuPropagateLabels.Rd: mxModel xmuRAM2Ordinal.Rd: mxModel xmuValues.Rd: mxModel, mxMatrix xmu_CI_stash.Rd: mxModel xmu_DF_to_mxData_TypeCov.Rd: mxData xmu_cell_is_on.Rd: mxModel xmu_check_needs_means.Rd: mxData xmu_describe_data_WLS.Rd: mxFitFunctionWLS, omxAugmentDataWithWLSSummary xmu_dot_maker.Rd: mxModel xmu_extract_column.Rd: mxData xmu_get_CI.Rd: mxModel xmu_make_TwinSuperModel.Rd: mxModel xmu_make_mxData.Rd: mxData xmu_safe_run_summary.Rd: mxModel, mxTryHard xmu_show_fit_or_comparison.Rd: mxModel xmu_standardize_RAM.Rd: mxModel Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [88s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [433s] OK Running 'testthat.R' [433s] * checking PDF version of manual ... [75s] OK * checking HTML version of manual ... [68s] OK * DONE Status: 2 NOTEs