* using log directory 'd:/Rcompile/CRANpkg/local/4.6/BayesianFitForecast.Rcheck' * using R version 4.6.0 beta (2026-04-16 r89899 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-04-17 08:00:35 UTC * checking for file 'BayesianFitForecast/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'BayesianFitForecast' version '1.1.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'BayesianFitForecast' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [4s] OK * checking loading without being on the library search path ... [8s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s] OK * checking Rd files ... [0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [8s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [68s] ERROR Running 'testthat.R' [67s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(BayesianFitForecast) > > test_check("BayesianFitForecast") Option file path: D:/RCompile/CRANpkg/lib/4.6/BayesianFitForecast/extdata/option.R Excel file path: D:/RCompile/CRANpkg/lib/4.6/BayesianFitForecast/extdata/SanFrancisco.xlsx Output path: D:\temp\2026_04_17_01_50_00_1722\RtmpQFtx3s Loading required package: StanHeaders rstan version 2.32.7 (Stan version 2.32.2) For execution on a local, multicore CPU with excess RAM we recommend calling options(mc.cores = parallel::detectCores()). To avoid recompilation of unchanged Stan programs, we recommend calling rstan_options(auto_write = TRUE) For within-chain threading using `reduce_sum()` or `map_rect()` Stan functions, change `threads_per_chain` option: rstan_options(threads_per_chain = 1) Do not specify '-march=native' in 'LOCAL_CPPFLAGS' or a Makevars file specified C++17 make cmd is make -f "D:/RCompile/recent/R/etc/x64/Makeconf" -f "D:/RCompile/recent/R/share/make/winshlib.mk" CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB="filec670235340ff.dll" WIN=64 TCLBIN= OBJECTS="filec670235340ff.o" make would use make[1]: Entering directory '/d/temp/2026_04_17_01_50_00_1722/RtmpQFtx3s' g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/" -I"D:/temp/2026_04_17_01_50_00_1722/Rtmp63drdV/RLIBS_149a02274743e/RcppEigen/include/" -I"D:/temp/2026_04_17_01_50_00_1722/Rtmp63drdV/RLIBS_149a02274743e/RcppEigen/include/unsupported" -I"D:/temp/2026_04_17_01_50_00_1722/Rtmp63drdV/RLIBS_149a02274743e/BH/include" -I"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/include/src/" -I"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/include/" -I"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -I"D:/RCompile/CRANpkg/lib/4.6/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include "D:/RCompile/CRANpkg/lib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp" -std=c++1y -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c filec670235340ff.cpp -o filec670235340ff.o if test "zfilec670235340ff.o" != "z"; then \ if test -e "filec670235340ff-win.def"; then \ echo g++ -shared -s -static-libgcc -o filec670235340ff.dll filec670235340ff-win.def filec670235340ff.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64" -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o filec670235340ff.dll filec670235340ff-win.def filec670235340ff.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64" -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \ else \ echo EXPORTS > tmp.def; \ nm filec670235340ff.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \ echo g++ -shared -s -static-libgcc -o filec670235340ff.dll tmp.def filec670235340ff.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64" -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o filec670235340ff.dll tmp.def filec670235340ff.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64" -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \ rm -f tmp.def; \ fi \ fi make[1]: Leaving directory '/d/temp/2026_04_17_01_50_00_1722/RtmpQFtx3s' Saving _problems/test-Run_MCMC-27.R Data file path: D:/RCompile/CRANpkg/lib/4.6/BayesianFitForecast/extdata Option file path: D:/RCompile/CRANpkg/lib/4.6/BayesianFitForecast/extdata/option.R Excel file path: D:/RCompile/CRANpkg/lib/4.6/BayesianFitForecast/extdata/SanFrancisco.xlsx Output path: D:\temp\2026_04_17_01_50_00_1722\RtmpQFtx3s This is bayesplot version 1.15.0 - Online documentation and vignettes at mc-stan.org/bayesplot - bayesplot theme set to bayesplot::theme_default() * Does _not_ affect other ggplot2 plots * See ?bayesplot_theme_set for details on theme setting This is loo version 2.9.0 - Online documentation and vignettes at mc-stan.org/loo - As of v2.0.0 loo defaults to 1 core but we recommend using as many as possible. Use the 'cores' argument or set options(mc.cores = NUM_CORES) for an entire session. - Windows 10 users: loo may be very slow if 'mc.cores' is set in your .Rprofile file (see https://github.com/stan-dev/loo/issues/94). Attaching package: 'loo' The following object is masked from 'package:rstan': loo The following object is masked from 'package:testthat': compare Attaching package: 'openxlsx' The following objects are masked from 'package:xlsx': createWorkbook, loadWorkbook, read.xlsx, saveWorkbook, write.xlsx Loaded file: D:\RCompile\CRANpkg\lib\4.6\BayesianFitForecast\extdata/Bayesian-uniform-cal-17-fcst-0-poisson-sanfrancisco-fit.Rdata No time-dependent templates provided — skipping time-dependent plots. [ FAIL 1 | WARN 8 | SKIP 0 | PASS 8 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-Run_MCMC.R:25:5'): Run_MCMC works with example files ─────────── Error in `sink(type = "output")`: invalid connection Backtrace: ▆ 1. ├─base::eval(...) 2. │ └─base::eval(...) 3. │ ├─testthat::expect_no_error(Run_MCMC(option_file, excel_file, output_path)) at test-Run_MCMC.R:25:5 4. │ │ └─testthat:::expect_no_(...) 5. │ │ └─testthat:::quasi_capture(enquo(object), NULL, capture) 6. │ │ ├─testthat (local) .capture(...) 7. │ │ │ ├─base::withRestarts(...) 8. │ │ │ │ └─base (local) withOneRestart(expr, restarts[[1L]]) 9. │ │ │ │ └─base (local) doWithOneRestart(return(expr), restart) 10. │ │ │ └─base::withCallingHandlers(...) 11. │ │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 12. │ └─BayesianFitForecast::Run_MCMC(option_file, excel_file, output_path) 13. │ ├─base::tryCatch(...) 14. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 15. │ └─base::source(temp_file, local = FALSE) 16. │ ├─base::withVisible(eval(ei, envir)) 17. │ └─base::eval(ei, envir) 18. │ └─base::eval(ei, envir) 19. └─rstan::stan_model(file.path(output_path, "ode_model.stan")) 20. └─rstan:::cxxfunctionplus(...) 21. └─base::sink(type = "output") [ FAIL 1 | WARN 8 | SKIP 0 | PASS 8 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [2s] OK * checking PDF version of manual ... [19s] OK * checking HTML version of manual ... [1s] OK * DONE Status: 1 ERROR