Last updated on 2026-03-07 22:51:44 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 0.36 | 4.02 | 4.38 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 2.92 | 213.84 | 216.76 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 9.00 | 402.57 | 411.57 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 7.00 | 653.63 | 660.63 | OK | |
| r-devel-macos-arm64 | 0.1.0 | 1.00 | 101.00 | 102.00 | OK | |
| r-devel-windows-x86_64 | 0.1.0 | 7.00 | 361.00 | 368.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 4.27 | 280.82 | 285.09 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 3.62 | 281.91 | 285.53 | OK | |
| r-release-macos-arm64 | 0.1.0 | OK | ||||
| r-release-macos-x86_64 | 0.1.0 | 3.00 | 336.00 | 339.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 7.00 | 309.00 | 316.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 3.00 | 294.00 | 297.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 9.00 | 411.00 | 420.00 | OK |
Version: 0.1.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Gabriele",
family = "Lubatti",
role = c("aut", "cre"),
email = "gabriele.lubatti@helmholtz-muenchen.de")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: package dependencies
Result: ERROR
Packages required but not available: 'Biostrings', 'Rsamtools'
Packages suggested but not available for checking:
'karyoploteR', 'regioneR'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘MitoHEAR.Rmd’ using rmarkdown
*** caught segfault ***
address 0x2b6, cause 'memory not mapped'
Traceback:
1: grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, resolveHJust(x$just, x$hjust), resolveVJust(x$just, x$vjust), x$rot, as.numeric(NA))
2: widthDetails.text(x)
3: widthDetails(x)
4: (function (x) { widthDetails(x)})(list(label = "Cluster", x = 0, y = 0.5, just = "centre", hjust = 0, vjust = 0.5, rot = 0, check.overlap = FALSE, name = "GRID.text.476", gp = list(fontsize = 11, col = "black", fontfamily = "", lineheight = 0.9, font = c(plain = 1L)), vp = NULL))
5: grid.Call(C_convert, x, as.integer(whatfrom), as.integer(whatto), valid.units(unitTo))
6: convertUnit(x, unitTo, "x", "dimension", "x", "dimension", valueOnly = valueOnly)
7: convertWidth(grobWidth(x), "cm", TRUE)
8: width_cm(title)
9: add_title(...)
10: self$add_title(gt, grobs$title, elements$title_position, rotate_just(element = elements$title))
11: assemble_drawing(..., self = self)
12: self$assemble_drawing(grobs, layout, sizes, params, elems)
13: draw(..., self = self)
14: guides[[i]]$draw(theme = theme, position = positions[i], direction = directions[i], params = params[[i]])
15: draw(..., self = self)
16: self$draw(theme, positions, theme$legend.direction)
17: assemble(..., self = self)
18: plot@guides$assemble(theme)
19: `ggplot_gtable.ggplot2::ggplot_built`(data)
20: ggplot_gtable(data)
21: `print.ggplot2::ggplot`(x)
22: (function (x, ...) UseMethod("print"))(x)
23: print.default(x)
24: print(x)
25: normal_print(x)
26: knit_print.default(x, ...)
27: knit_print(x, ...)
28: withVisible(knit_print(x, ...))
29: fun(x, options = options)
30: handler$value(value, visible)
31: handle_value(handler, value, visible, envir)
32: withVisible(handle_value(handler, value, visible, envir))
33: watcher$print_value(ev$value, ev$visible, envir)
34: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
35: eval(call)
36: eval(call)
37: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
38: doWithOneRestart(return(expr), restart)
39: withOneRestart(expr, restarts[[1L]])
40: withRestartList(expr, restarts[-nr])
41: doWithOneRestart(return(expr), restart)
42: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
43: withRestartList(expr, restarts)
44: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
45: evaluate::evaluate(...)
46: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
47: in_dir(input_dir(), expr)
48: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
49: eng_r(options)
50: block_exec(params)
51: call_block(x)
52: process_group(group)
53: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
54: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
55: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
56: process_file(text, output)
57: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
58: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
59: vweave_rmarkdown(...)
60: engine$weave(file, quiet = quiet, encoding = enc)
61: doTryCatch(return(expr), name, parentenv, handler)
62: tryCatchOne(expr, names, parentenv, handlers[[1L]])
63: tryCatchList(expr, classes, parentenv, handlers)
64: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
65: tools::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/MitoHEAR.Rcheck/vign_test/MitoHEAR", skip = TRUE, ser_elibs = "/tmp/RtmpxjNBvz/file2a5b0b5556c07b.rds")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang