Last updated on 2026-06-07 23:50:26 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.4 | 12.62 | 526.20 | 538.82 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.11.4 | 8.08 | 80.35 | 88.43 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.11.4 | 20.00 | 892.88 | 912.88 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.11.4 | 19.00 | 850.00 | 869.00 | OK | |
| r-devel-windows-x86_64 | 0.11.4 | 16.00 | 546.00 | 562.00 | OK | |
| r-patched-linux-x86_64 | 0.11.4 | 12.95 | 505.97 | 518.92 | OK | |
| r-release-linux-x86_64 | 0.11.4 | 10.53 | 512.41 | 522.94 | OK | |
| r-release-macos-arm64 | 0.11.4 | 3.00 | 122.00 | 125.00 | OK | |
| r-release-macos-x86_64 | 0.11.4 | 8.00 | 575.00 | 583.00 | OK | |
| r-release-windows-x86_64 | 0.11.4 | 14.00 | 550.00 | 564.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.4 | 3.00 | 131.00 | 134.00 | OK | |
| r-oldrel-macos-x86_64 | 0.11.4 | 8.00 | 674.00 | 682.00 | OK | |
| r-oldrel-windows-x86_64 | 0.11.4 | 20.00 | 773.00 | 793.00 | OK |
Version: 0.11.4
Check: examples
Result: ERROR
Running examples in ‘adjustedCurves-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: adjusted_curve_test
> ### Title: Test if there is a difference between two Confounder-Adjusted
> ### Survival Curves or CIFs
> ### Aliases: adjusted_curve_test
>
> ### ** Examples
>
> library(adjustedCurves)
> library(survival)
>
> #### Simple Survival Case with adjusted survival curves ####
>
> # simulate some data as example
> set.seed(42)
> sim_dat <- sim_confounded_surv(n=50, max_t=1.2)
> sim_dat$group <- as.factor(sim_dat$group)
>
> # estimate a cox-regression for the outcome
> cox_mod <- coxph(Surv(time, event) ~ x1 + x2 + x3 + x4 + x5 + x6 + group,
+ data=sim_dat, x=TRUE)
>
> # use it to estimate adjusted survival curves with bootstrapping
> adjsurv <- adjustedsurv(data=sim_dat,
+ variable="group",
+ ev_time="time",
+ event="event",
+ method="direct",
+ outcome_model=cox_mod,
+ conf_int=FALSE,
+ bootstrap=TRUE,
+ n_boot=10) # n_boot should be much higher in reality
Loading required namespace: riskRegression
Failed with error: ‘there is no package called ‘riskRegression’’
Error in loadNamespace(x) : there is no package called ‘riskRegression’
Calls: adjustedsurv ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.11.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(adjustedCurves)
>
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
>
> library(testthat)
> library(vdiffr)
> library(survival)
> library(ggplot2)
> library(Matching)
Loading required package: MASS
Attaching package: 'MASS'
The following object is masked from 'package:dplyr':
select
##
## Matching (Version 4.10-15, Build Date: 2024-10-14)
## See https://www.jsekhon.com for additional documentation.
## Please cite software as:
## Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching
## Software with Automated Balance Optimization: The Matching package for R.''
## Journal of Statistical Software, 42(7): 1-52.
##
> library(WeightIt)
> library(prodlim)
> library(MASS)
> library(tidyr)
> library(riskRegression)
Error in library(riskRegression) :
there is no package called 'riskRegression'
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.11.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘adjustedCurves.Rmd’ using rmarkdown
Quitting from adjustedCurves.Rmd:39-56 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'riskRegression'
---
Backtrace:
▆
1. └─base::library(riskRegression)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'adjustedCurves.Rmd' failed with diagnostics:
there is no package called 'riskRegression'
--- failed re-building ‘adjustedCurves.Rmd’
--- re-building ‘comparing_groups.rmd’ using rmarkdown
Quitting from comparing_groups.rmd:29-40 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'pammtools'
---
Backtrace:
▆
1. └─base::library(pammtools)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'comparing_groups.rmd' failed with diagnostics:
there is no package called 'pammtools'
--- failed re-building ‘comparing_groups.rmd’
--- re-building ‘faq.rmd’ using rmarkdown
--- finished re-building ‘faq.rmd’
--- re-building ‘method_overview.rmd’ using rmarkdown
--- finished re-building ‘method_overview.rmd’
--- re-building ‘plot_customization.rmd’ using rmarkdown
Failed with error: 'there is no package called 'pammtools''
Quitting from plot_customization.rmd:89-91 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'pammtools'
---
Backtrace:
▆
1. ├─base::plot(s_iptw, conf_int = TRUE)
2. ├─adjustedCurves:::plot.adjustedsurv(s_iptw, conf_int = TRUE)
3. │ └─adjustedCurves:::add_ci_ribbon(...)
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'plot_customization.rmd' failed with diagnostics:
there is no package called 'pammtools'
--- failed re-building ‘plot_customization.rmd’
SUMMARY: processing the following files failed:
‘adjustedCurves.Rmd’ ‘comparing_groups.rmd’ ‘plot_customization.rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc