Last updated on 2025-07-25 17:50:19 CEST.
| Package | ERROR | OK |
|---|---|---|
| gimap | 1 | 12 |
| metricminer | 13 | |
| ottrpal | 13 | |
| rsynthbio | 13 |
Current CRAN status: ERROR: 1, OK: 12
Version: 1.1.1
Check: examples
Result: ERROR
Running examples in 'gimap-Ex.R' failed
The error most likely occurred in:
> ### Name: setup_data
> ### Title: Making a new gimap dataset
> ### Aliases: setup_data
>
> ### ** Examples
>
>
> counts <- get_example_data("count", data_dir = tempdir()) %>%
+ dplyr::select(c(
+ "Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB",
+ "Day22_RepC"
+ )) %>%
+ as.matrix()
Downloading: 1.4 kB
Downloading: 1.4 kB
Downloading: 1.4 kB
Downloading: 1.4 kB Downloading: PP_pgPEN_HeLa_counts.txt
|
| | 0%
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|======================================================================| 100%
Error in get_figshare(file_name = file_name, item = "28264271", output_dir = data_dir) :
Gateway Timeout (HTTP 504).
Calls: %>% ... <Anonymous> -> get_example_data -> get_figshare -> <Anonymous>
Execution halted
Flavor: r-oldrel-windows-x86_64
Version: 1.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'quick-start.Rmd' using rmarkdown
File output_timepoints/exp_v_obs_scatter.png not found in resource path
Error: processing vignette 'quick-start.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'quick-start.Rmd'
--- re-building 'timepoint-example.Rmd' using rmarkdown
Warning in get_engine(options$engine) :
Unknown language engine 'reval' (must be registered via knit_engines$set()).
File output_timepoints/exp_v_obs_scatter.png not found in resource path
Error: processing vignette 'timepoint-example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'timepoint-example.Rmd'
--- re-building 'treatment_example.Rmd' using rmarkdown
File output_treatment/exp_v_obs_scatter.png not found in resource path
Error: processing vignette 'treatment_example.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'treatment_example.Rmd'
SUMMARY: processing the following files failed:
'quick-start.Rmd' 'timepoint-example.Rmd' 'treatment_example.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13