Last updated on 2026-06-25 13:50:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 32.12 | 324.36 | 356.48 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 22.38 | 216.58 | 238.96 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 57.00 | 483.23 | 540.23 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 60.00 | 566.16 | 626.16 | OK | |
| r-devel-windows-x86_64 | 0.1.2 | 38.00 | 272.00 | 310.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 31.46 | 308.62 | 340.08 | OK | |
| r-release-linux-x86_64 | 0.1.1 | 33.08 | 312.65 | 345.73 | ERROR | |
| r-release-macos-arm64 | 0.1.2 | 8.00 | 77.00 | 85.00 | OK | |
| r-release-macos-x86_64 | 0.1.2 | 25.00 | 337.00 | 362.00 | OK | |
| r-release-windows-x86_64 | 0.1.2 | 36.00 | 274.00 | 310.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.2 | 8.00 | 112.00 | 120.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.2 | 24.00 | 347.00 | 371.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.2 | 48.00 | 370.00 | 418.00 | OK |
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [25s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dbSpatial)
>
> test_check("dbSpatial")
Saving _problems/test-extract-15.R
Saving _problems/test-spatial-functions-15.R
Saving _problems/test-spatial-functions-35.R
Saving _problems/test-spatial-functions-70.R
Saving _problems/test-spatial-functions-95.R
Saving _problems/test-spatial-functions-117.R
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-extract.R:8:3'): $ extracts column values ──────────────────────
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-5ecceff8-23c0-44b8-9370-c5df2a4d3005.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-extract.R:8:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
── Error ('test-spatial-functions.R:8:3'): dbSpatial constructor works ─────────
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-2800b47a-e26e-4b6b-a35e-898f1539f1ff.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-spatial-functions.R:8:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
── Error ('test-spatial-functions.R:28:3'): basic spatial functions work ───────
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-525a405e-be4b-4c9a-af23-c96d7402f62f.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-spatial-functions.R:28:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
── Error ('test-spatial-functions.R:63:3'): st_geometrytype returns expected types lazily ──
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-b7b27268-eabb-4eec-8721-501292b8af66.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-spatial-functions.R:63:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
── Error ('test-spatial-functions.R:88:3'): st_join works with different predicates ──
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-43cd8a38-13c1-47ac-ace4-65da918151a0.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-spatial-functions.R:88:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
── Error ('test-spatial-functions.R:110:3'): unsupported args warn ─────────────
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-8170673c-c3c6-4650-a8d8-f75625bad429.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-spatial-functions.R:110:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘class_structure.Rmd’ using rmarkdown
Quitting from class_structure.Rmd:32-52 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dbSendQuery()`:
! Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-989860c0-6cc3-41ea-822f-810e485a62d1.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, query)
6. └─DBI::dbExecute(conn, query)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'class_structure.Rmd' failed with diagnostics:
Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-989860c0-6cc3-41ea-822f-810e485a62d1.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
--- failed re-building ‘class_structure.Rmd’
--- re-building ‘getting_started.Rmd’ using rmarkdown
Quitting from getting_started.Rmd:40-53 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dbSendQuery()`:
! Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-65beeb0b-0e56-475d-8c34-537c0c7a27f7.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, query)
6. └─DBI::dbExecute(conn, query)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getting_started.Rmd' failed with diagnostics:
Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-65beeb0b-0e56-475d-8c34-537c0c7a27f7.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
--- failed re-building ‘getting_started.Rmd’
--- re-building ‘spatial_operations.Rmd’ using rmarkdown
Quitting from spatial_operations.Rmd:24-35 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dbSendQuery()`:
! Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-5a0e0350-48fa-42da-b214-a39158d0aaa9.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, query)
6. └─DBI::dbExecute(conn, query)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'spatial_operations.Rmd' failed with diagnostics:
Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-5a0e0350-48fa-42da-b214-a39158d0aaa9.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
--- failed re-building ‘spatial_operations.Rmd’
SUMMARY: processing the following files failed:
‘class_structure.Rmd’ ‘getting_started.Rmd’ ‘spatial_operations.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘class_structure.Rmd’ using rmarkdown
Quitting from class_structure.Rmd:34-54 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `duckdb_result()`:
! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/RtmpYtrVve/working_dir/Rtmphk9g9w/dbSpatial-duckdb-extensions/v1.5.4/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, "LOAD spatial")
6. └─DBI::dbExecute(conn, "LOAD spatial")
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
11. └─duckdb (local) .local(conn, statement, ...)
12. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'class_structure.Rmd' failed with diagnostics:
Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/RtmpYtrVve/working_dir/Rtmphk9g9w/dbSpatial-duckdb-extensions/v1.5.4/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
--- failed re-building ‘class_structure.Rmd’
--- re-building ‘getting_started.Rmd’ using rmarkdown
Quitting from getting_started.Rmd:42-55 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `duckdb_result()`:
! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/RtmpYtrVve/working_dir/RtmpLnm4da/dbSpatial-duckdb-extensions/v1.5.4/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, "LOAD spatial")
6. └─DBI::dbExecute(conn, "LOAD spatial")
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
11. └─duckdb (local) .local(conn, statement, ...)
12. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getting_started.Rmd' failed with diagnostics:
Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/RtmpYtrVve/working_dir/RtmpLnm4da/dbSpatial-duckdb-extensions/v1.5.4/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
--- failed re-building ‘getting_started.Rmd’
--- re-building ‘spatial_operations.Rmd’ using rmarkdown
Quitting from spatial_operations.Rmd:26-37 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `duckdb_result()`:
! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/RtmpYtrVve/working_dir/RtmpHs45dh/dbSpatial-duckdb-extensions/v1.5.4/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, "LOAD spatial")
6. └─DBI::dbExecute(conn, "LOAD spatial")
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
11. └─duckdb (local) .local(conn, statement, ...)
12. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'spatial_operations.Rmd' failed with diagnostics:
Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/RtmpYtrVve/working_dir/RtmpHs45dh/dbSpatial-duckdb-extensions/v1.5.4/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
--- failed re-building ‘spatial_operations.Rmd’
SUMMARY: processing the following files failed:
‘class_structure.Rmd’ ‘getting_started.Rmd’ ‘spatial_operations.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/28s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dbSpatial)
>
> test_check("dbSpatial")
Saving _problems/test-extract-15.R
Saving _problems/test-spatial-functions-15.R
Saving _problems/test-spatial-functions-35.R
Saving _problems/test-spatial-functions-70.R
Saving _problems/test-spatial-functions-95.R
Saving _problems/test-spatial-functions-117.R
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-extract.R:8:3'): $ extracts column values ──────────────────────
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-4ddbd7df-2f55-4c44-b210-6c8fde7f95bd.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-extract.R:8:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
── Error ('test-spatial-functions.R:8:3'): dbSpatial constructor works ─────────
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-eb41a2f5-3bf7-4964-b43d-be5867f8f05f.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-spatial-functions.R:8:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
── Error ('test-spatial-functions.R:28:3'): basic spatial functions work ───────
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-d7dc0fe2-498f-44fe-a9c7-c16e5df981e6.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-spatial-functions.R:28:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
── Error ('test-spatial-functions.R:63:3'): st_geometrytype returns expected types lazily ──
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-30cf2667-df98-43ab-ab6a-af7fd13ab0fd.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-spatial-functions.R:63:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
── Error ('test-spatial-functions.R:88:3'): st_join works with different predicates ──
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-ff102ed8-85b5-4508-b443-003471705ae0.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-spatial-functions.R:88:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
── Error ('test-spatial-functions.R:110:3'): unsupported args warn ─────────────
Error in `dbSendQuery(conn, statement, ...)`: Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-c8e0823a-0a1d-4a66-9209-21657a2adce5.duckdb_extension": Read-only file system
i Context: rapi_prepare
i Error type: INVALID
Backtrace:
▆
1. ├─dbSpatial::dbSpatial(...) at test-spatial-functions.R:110:3
2. │ ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─dbSpatial::loadSpatial(conn = conn)
5. │ ├─DBI::dbExecute(conn, query)
6. │ └─DBI::dbExecute(conn, query)
7. │ ├─DBI::dbSendStatement(conn, statement, ...)
8. │ └─DBI::dbSendStatement(conn, statement, ...)
9. │ ├─DBI::dbSendQuery(conn, statement, ...)
10. │ └─duckdb::dbSendQuery(conn, statement, ...)
11. │ └─duckdb (local) .local(conn, statement, ...)
12. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_prepare(conn, query, env)
20. ├─duckdb (local) `<fn>`(...)
21. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
22. │ └─rlang:::signal_abort(cnd, .file)
23. │ └─base::signalCondition(cnd)
24. └─rlang (local) `<fn>`(`<dckdb_rr>`)
25. └─handlers[[1L]](cnd)
26. └─duckdb:::rethrow_error_from_rapi(e, call)
27. └─rlang::abort(msg, call = call)
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘class_structure.Rmd’ using rmarkdown
Quitting from class_structure.Rmd:32-52 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dbSendQuery()`:
! Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-76444a1f-7798-4ea1-bac0-641fcfba4702.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, query)
6. └─DBI::dbExecute(conn, query)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'class_structure.Rmd' failed with diagnostics:
Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-76444a1f-7798-4ea1-bac0-641fcfba4702.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
--- failed re-building ‘class_structure.Rmd’
--- re-building ‘getting_started.Rmd’ using rmarkdown
Quitting from getting_started.Rmd:40-53 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dbSendQuery()`:
! Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-04b6719a-81ae-44a0-9008-6171f314a6c2.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, query)
6. └─DBI::dbExecute(conn, query)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getting_started.Rmd' failed with diagnostics:
Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-04b6719a-81ae-44a0-9008-6171f314a6c2.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
--- failed re-building ‘getting_started.Rmd’
--- re-building ‘spatial_operations.Rmd’ using rmarkdown
Quitting from spatial_operations.Rmd:24-35 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dbSendQuery()`:
! Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-78cf914f-6aa8-4a29-8f42-908c533c6dad.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, query)
6. └─DBI::dbExecute(conn, query)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'spatial_operations.Rmd' failed with diagnostics:
Invalid Error: IO Error: Cannot open file "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension.tmp-78cf914f-6aa8-4a29-8f42-908c533c6dad.duckdb_extension": Read-only file system
ℹ Context: rapi_prepare
ℹ Error type: INVALID
--- failed re-building ‘spatial_operations.Rmd’
SUMMARY: processing the following files failed:
‘class_structure.Rmd’ ‘getting_started.Rmd’ ‘spatial_operations.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64