CRAN Package Check Results for Maintainer ‘Jonathan Mitchel <jonathan.mitchel3 at gmail.com>’

Last updated on 2026-02-03 16:50:10 CET.

Package	ERROR	OK
scITD	1	12

Package scITD

Current CRAN status: ERROR: 1, OK: 12

Version: 1.0.4
Check: examples
Result: ERROR Running examples in ‘scITD-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: run_gsea_one_factor > ### Title: Run gsea separately for all cell types of one specified factor > ### and plot results > ### Aliases: run_gsea_one_factor > > ### ** Examples > > test_container <- run_gsea_one_factor(test_container, factor_select=1, + method="fgsea", thresh=0.05, db_use="Hallmark", signed=TRUE) Warning: The `category` argument of `msigdbr()` is deprecated as of msigdbr 10.0.0. ℹ Please use the `collection` argument instead. ℹ The deprecated feature was likely used in the scITD package. Please report the issue to the authors. Error in curl::curl_download(url = file_url, destfile = file_path, quiet = verbose, : HTTP response code said error [zenodo.org]: The requested URL returned error: 504 Calls: run_gsea_one_factor ... load_msigdb_df -> <Anonymous> -> raise_libcurl_error Execution halted Flavor: r-devel-linux-x86_64-debian-gcc