Last updated on 2025-07-30 23:51:34 CEST.
Package | ERROR | NOTE | OK |
---|---|---|---|
clam | 1 | 12 | |
coffee | 13 | ||
IntCal | 13 | ||
rbacon | 13 | ||
rice | 1 | 12 | |
rintcal | 13 | ||
rplum | 13 |
Current CRAN status: ERROR: 1, OK: 12
Version: 2.6.2
Check: examples
Result: ERROR
Running examples in ‘clam-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add.dates
> ### Title: Add dates to age-depth plots
> ### Aliases: add.dates
>
> ### ** Examples
>
> base_temp_dir <- tempdir()
> clam_dir <- file.path(base_temp_dir, "clam_runs")
> dir.create(clam_dir, recursive = TRUE, showWarnings = FALSE)
> clam(, coredir=clam_dir, ask=FALSE)
The run's files will be put in this folder: /home/hornik/tmp/scratch/RtmpZXTYav/clam_runs/Example
Warning, some dates lie partly outside the calibration curve!
Error in `[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]])) :
undefined columns selected
Calls: clam -> .read.clam -> [ -> [.data.frame
Execution halted
Flavor: r-release-linux-x86_64
Version: 2.6.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘clam.Rmd’ using rmarkdown
Quitting from clam.Rmd:30-36 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. └─clam::clam(, ask = FALSE, coredir = clam_dir)
2. └─clam:::.read.clam(...)
3. ├─dat$hpd[[i]][2 * nrow(dat$hpd[[i]])]
4. └─base::`[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]]))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'clam.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘clam.Rmd’
SUMMARY: processing the following file failed:
‘clam.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 1, OK: 12
Version: 1.3.0
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
‘rnaturalearthhires’
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13