Last updated on 2026-03-11 12:53:57 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.0 | 35.77 | 732.99 | 768.76 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.11.0 | 27.45 | 478.87 | 506.32 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.11.0 | 65.00 | 1121.26 | 1186.26 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.11.0 | 69.00 | 1202.06 | 1271.06 | OK | |
| r-devel-macos-arm64 | 0.11.0 | 8.00 | 120.00 | 128.00 | OK | |
| r-devel-windows-x86_64 | 0.11.0 | 42.00 | 562.00 | 604.00 | OK | |
| r-patched-linux-x86_64 | 0.11.0 | 53.38 | 646.14 | 699.52 | OK | |
| r-release-linux-x86_64 | 0.11.0 | 35.43 | 648.08 | 683.51 | OK | |
| r-release-macos-arm64 | 0.11.0 | 8.00 | 113.00 | 121.00 | OK | |
| r-release-macos-x86_64 | 0.11.0 | 28.00 | 883.00 | 911.00 | OK | |
| r-release-windows-x86_64 | 0.11.0 | 39.00 | 518.00 | 557.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.0 | 8.00 | 109.00 | 117.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.11.0 | 24.00 | 319.00 | 343.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.11.0 | 53.00 | 626.00 | 679.00 | ERROR |
Version: 0.11.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [90s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-11 23:16:57.721719: Isomap START
> test_pipeop_isomap.R: 2026-03-11 23:16:57.721968: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:57.725123: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:57.731301: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 23:16:57.744623: Isomap START
> test_pipeop_isomap.R: 2026-03-11 23:16:57.744758: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:57.747273: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:57.753382: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 23:16:57.760774: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 23:16:57.76097: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:57.765415: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:57.779454: embedding
> test_pipeop_isomap.R: 2026-03-11 23:16:57.779791: DONE
> test_pipeop_isomap.R: 2026-03-11 23:16:57.785194: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 23:16:57.785307: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:57.824553: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:57.838204: embedding
> test_pipeop_isomap.R: 2026-03-11 23:16:57.8387: DONE
> test_pipeop_isomap.R: 2026-03-11 23:16:57.868402: Isomap START
> test_pipeop_isomap.R: 2026-03-11 23:16:57.868544: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:57.872985: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:57.907136: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 23:16:57.915747: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 23:16:57.91594: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:57.924331: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.002206: embedding
> test_pipeop_isomap.R: 2026-03-11 23:16:58.003202: DONE
> test_pipeop_isomap.R: 2026-03-11 23:16:58.046366: Isomap START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.046499: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.048723: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.054662: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 23:16:58.060965: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.061132: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.065473: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.080138: embedding
> test_pipeop_isomap.R: 2026-03-11 23:16:58.080559: DONE
> test_pipeop_isomap.R: 2026-03-11 23:16:58.114507: Isomap START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.114637: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.116915: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.122902: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 23:16:58.13415: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.13435: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.138429: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.151274: embedding
> test_pipeop_isomap.R: 2026-03-11 23:16:58.151521: DONE
> test_pipeop_isomap.R: 2026-03-11 23:16:58.185956: Isomap START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.186123: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.188443: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.194654: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 23:16:58.207777: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.207973: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.212464: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.227256: embedding
> test_pipeop_isomap.R: 2026-03-11 23:16:58.22767: DONE
> test_pipeop_isomap.R: 2026-03-11 23:16:58.247393: Isomap START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.247553: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.249906: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.255938: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 23:16:58.267742: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.267944: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.272417: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.287368: embedding
> test_pipeop_isomap.R: 2026-03-11 23:16:58.287807: DONE
> test_pipeop_isomap.R: 2026-03-11 23:16:58.315947: Isomap START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.31614: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.318856: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.325148: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 23:16:58.343666: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.343852: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.348483: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.362931: embedding
> test_pipeop_isomap.R: 2026-03-11 23:16:58.363306: DONE
> test_pipeop_isomap.R: 2026-03-11 23:16:58.383722: Isomap START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.383869: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.386197: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.392245: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 23:16:58.41183: Isomap START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.411996: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.414381: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.420543: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 23:16:58.426809: Isomap START
> test_pipeop_isomap.R: 2026-03-11 23:16:58.426955: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 23:16:58.429259: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 23:16:58.435278: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_subsample.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [250s/155s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-11 07:08:51.718703: Isomap START
> test_pipeop_isomap.R: 2026-03-11 07:08:51.71918: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:51.734969: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:51.754665: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 07:08:51.812668: Isomap START
> test_pipeop_isomap.R: 2026-03-11 07:08:51.812963: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:51.828621: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:51.851251: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 07:08:51.883702: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 07:08:51.884215: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:51.899596: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:51.954961: embedding
> test_pipeop_isomap.R: 2026-03-11 07:08:51.956059: DONE
> test_pipeop_isomap.R: 2026-03-11 07:08:51.984163: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 07:08:51.984465: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:52.010068: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:52.066077: embedding
> test_pipeop_isomap.R: 2026-03-11 07:08:52.06724: DONE
> test_pipeop_isomap.R: 2026-03-11 07:08:52.243625: Isomap START
> test_pipeop_isomap.R: 2026-03-11 07:08:52.243958: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:52.261574: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:52.396442: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 07:08:52.449536: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 07:08:52.450182: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:52.491485: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:52.773438: embedding
> test_pipeop_isomap.R: 2026-03-11 07:08:52.78056: DONE
> test_pipeop_isomap.R: 2026-03-11 07:08:52.932482: Isomap START
> test_pipeop_isomap.R: 2026-03-11 07:08:52.932775: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:52.959475: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:52.976397: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 07:08:53.001164: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 07:08:53.001583: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:53.029895: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:53.099862: embedding
> test_pipeop_isomap.R: 2026-03-11 07:08:53.101259: DONE
> test_pipeop_isomap.R: 2026-03-11 07:08:53.292682: Isomap START
> test_pipeop_isomap.R: 2026-03-11 07:08:53.292962: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:53.303639: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:53.340664: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 07:08:53.405139: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 07:08:53.405565: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:53.419066: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:53.46309: embedding
> test_pipeop_isomap.R: 2026-03-11 07:08:53.464165: DONE
> test_pipeop_isomap.R: 2026-03-11 07:08:53.561538: Isomap START
> test_pipeop_isomap.R: 2026-03-11 07:08:53.561837: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:53.573156: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:53.610279: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 07:08:53.658188: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 07:08:53.65878: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:53.679062: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:53.739812: embedding
> test_pipeop_isomap.R: 2026-03-11 07:08:53.743835: DONE
> test_pipeop_isomap.R: 2026-03-11 07:08:53.830996: Isomap START
> test_pipeop_isomap.R: 2026-03-11 07:08:53.831284: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:53.838385: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:53.861156: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 07:08:53.921883: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 07:08:53.92231: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:54.42008: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:54.476712: embedding
> test_pipeop_isomap.R: 2026-03-11 07:08:54.477811: DONE
> test_pipeop_isomap.R: 2026-03-11 07:08:54.555922: Isomap START
> test_pipeop_isomap.R: 2026-03-11 07:08:54.55624: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:54.563191: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:54.586339: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 07:08:54.629558: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 07:08:54.629981: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:54.650973: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:54.708847: embedding
> test_pipeop_isomap.R: 2026-03-11 07:08:54.709981: DONE
> test_pipeop_isomap.R: 2026-03-11 07:08:54.790538: Isomap START
> test_pipeop_isomap.R: 2026-03-11 07:08:54.790847: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:54.797363: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:54.817733: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 07:08:54.897065: Isomap START
> test_pipeop_isomap.R: 2026-03-11 07:08:54.89736: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:54.903898: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:54.92976: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 07:08:54.957437: Isomap START
> test_pipeop_isomap.R: 2026-03-11 07:08:54.957718: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 07:08:54.964316: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 07:08:54.986169: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'testthat.R' [237s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-09 18:45:28.956918: Isomap START
> test_pipeop_isomap.R: 2026-03-09 18:45:28.958725: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:28.970501: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:28.989875: Classical Scaling
> test_pipeop_isomap.R: 2026-03-09 18:45:29.121843: Isomap START
> test_pipeop_isomap.R: 2026-03-09 18:45:29.122582: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:29.133695: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:29.156344: Classical Scaling
> test_pipeop_isomap.R: 2026-03-09 18:45:29.200137: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-09 18:45:29.201072: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:29.222389: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:29.273462: embedding
> test_pipeop_isomap.R: 2026-03-09 18:45:29.275151: DONE
> test_pipeop_isomap.R: 2026-03-09 18:45:29.318844: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-09 18:45:29.319543: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:29.336927: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:29.382975: embedding
> test_pipeop_isomap.R: 2026-03-09 18:45:29.38497: DONE
> test_pipeop_isomap.R: 2026-03-09 18:45:29.509844: Isomap START
> test_pipeop_isomap.R: 2026-03-09 18:45:29.51047: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:29.534032: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:29.651913: Classical Scaling
> test_pipeop_isomap.R: 2026-03-09 18:45:29.705602: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-09 18:45:29.706522: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:29.761753: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:29.965872: embedding
> test_pipeop_isomap.R: 2026-03-09 18:45:29.969592: DONE
> test_pipeop_isomap.R: 2026-03-09 18:45:30.17324: Isomap START
> test_pipeop_isomap.R: 2026-03-09 18:45:30.173847: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:30.18517: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:30.206773: Classical Scaling
> test_pipeop_isomap.R: 2026-03-09 18:45:30.257212: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-09 18:45:30.257987: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:30.28749: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:30.334227: embedding
> test_pipeop_isomap.R: 2026-03-09 18:45:30.335536: DONE
> test_pipeop_isomap.R: 2026-03-09 18:45:30.531763: Isomap START
> test_pipeop_isomap.R: 2026-03-09 18:45:30.532383: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:30.542687: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:30.564999: Classical Scaling
> test_pipeop_isomap.R: 2026-03-09 18:45:30.638756: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-09 18:45:30.639594: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:30.660039: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:30.708601: embedding
> test_pipeop_isomap.R: 2026-03-09 18:45:30.710143: DONE
> test_pipeop_isomap.R: 2026-03-09 18:45:30.832855: Isomap START
> test_pipeop_isomap.R: 2026-03-09 18:45:30.833315: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:30.850676: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:30.872113: Classical Scaling
> test_pipeop_isomap.R: 2026-03-09 18:45:30.944578: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-09 18:45:30.94551: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:30.96632: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:31.01987: embedding
> test_pipeop_isomap.R: 2026-03-09 18:45:31.02148: DONE
> test_pipeop_isomap.R: 2026-03-09 18:45:31.129102: Isomap START
> test_pipeop_isomap.R: 2026-03-09 18:45:31.129688: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:31.139918: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:31.1652: Classical Scaling
> test_pipeop_isomap.R: 2026-03-09 18:45:31.241075: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-09 18:45:31.241976: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:31.261694: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:31.307333: embedding
> test_pipeop_isomap.R: 2026-03-09 18:45:31.321999: DONE
> test_pipeop_isomap.R: 2026-03-09 18:45:31.436619: Isomap START
> test_pipeop_isomap.R: 2026-03-09 18:45:31.437223: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:31.447529: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:31.469526: Classical Scaling
> test_pipeop_isomap.R: 2026-03-09 18:45:31.518556: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-09 18:45:31.519174: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:31.534636: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:31.580399: embedding
> test_pipeop_isomap.R: 2026-03-09 18:45:31.581963: DONE
> test_pipeop_isomap.R: 2026-03-09 18:45:31.725503: Isomap START
> test_pipeop_isomap.R: 2026-03-09 18:45:31.726154: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:31.736186: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:31.758417: Classical Scaling
> test_pipeop_isomap.R: 2026-03-09 18:45:31.871943: Isomap START
> test_pipeop_isomap.R: 2026-03-09 18:45:31.872569: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:31.88221: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:31.902913: Classical Scaling
> test_pipeop_isomap.R: 2026-03-09 18:45:31.936497: Isomap START
> test_pipeop_isomap.R: 2026-03-09 18:45:31.937146: constructing knn graph
> test_pipeop_isomap.R: 2026-03-09 18:45:31.947645: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-09 18:45:31.965749: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_info.R:3:1', 'test_pipeop_impute.R:4:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:3:3',
'test_pipeop_learnercv.R:43:3', 'test_pipeop_learnercv.R:73:3',
'test_pipeop_learnercv.R:92:3', 'test_pipeop_learnercv.R:141:3',
'test_pipeop_learnercv.R:157:3', 'test_pipeop_learnercv.R:203:3',
'test_pipeop_learnercv.R:249:3', 'test_pipeop_learnercv.R:278:3',
'test_pipeop_learnercv.R:332:3', 'test_pipeop_learnercv.R:359:3',
'test_pipeop_learnercv.R:389:3', 'test_pipeop_learnercv.R:399:3',
'test_pipeop_learnercv.R:432:3', 'test_pipeop_learnercv.R:472:3',
'test_pipeop_learnercv.R:481:3', 'test_pipeop_learnercv.R:498:3',
'test_pipeop_learnercv.R:506:3', 'test_pipeop_learnercv.R:530:3',
'test_pipeop_learnercv.R:554:3', 'test_pipeop_learnercv.R:634:3',
'test_pipeop_learnercv.R:654:3', 'test_pipeop_learnercv.R:669:3',
'test_pipeop_learnercv.R:754:3', 'test_pipeop_learnercv.R:799:3',
'test_pipeop_learnercv.R:827:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64