Last updated on 2026-02-27 12:53:20 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 37.32 | 825.25 | 862.57 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 21.63 | 524.59 | 546.22 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 65.00 | 1204.62 | 1269.62 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 60.00 | 1320.25 | 1380.25 | OK | |
| r-devel-macos-arm64 | 0.10.0 | 8.00 | 122.00 | 130.00 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 35.00 | 590.00 | 625.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 52.10 | 746.38 | 798.48 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 33.69 | 744.27 | 777.96 | ERROR | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 38.00 | 554.00 | 592.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 120.00 | 128.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 27.00 | 1012.00 | 1039.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 56.00 | 676.00 | 732.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [467s/232s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr
> test_mlr_graphs_robustify.R: ecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-02-21 16:27:23.635833: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:23.636974: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:23.653038: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:23.672962: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:23.729758: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:23.732083: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:23.739977: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:23.758714: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:23.788171: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:23.788858: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:23.803783: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:23.87493: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:23.877091: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:23.908632: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:23.909111: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:23.922593: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:23.966992: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:23.968239: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:24.061839: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:24.062302: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:24.076416: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:24.247616: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:24.293709: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:24.294446: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:24.324841: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:24.530069: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:24.534756: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:24.72045: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:24.720993: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:24.728767: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:24.753672: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:24.799505: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:24.800246: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:24.821001: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:24.865273: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:24.86667: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:25.042469: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.042951: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.052777: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.07293: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:25.131777: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.132481: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.161797: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.20782: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:25.209244: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:25.310354: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.310858: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.320498: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.340105: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:25.39721: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.39793: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.413737: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.46076: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:25.462131: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:25.568256: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.568711: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.577977: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.59745: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:25.65322: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.653921: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.671183: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.716432: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:25.719504: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:25.807073: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.807546: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.816955: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.836938: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:25.909425: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.910203: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.925057: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.968886: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:25.97021: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:26.066372: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:26.068763: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:26.075994: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:26.095305: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:26.184378: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:26.184854: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:26.207201: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:26.226661: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:26.260902: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:26.261405: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:26.268448: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:26.287689: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 1.271345')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [112s/55s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-28 00:19:30.234077: Isomap START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.234335: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.237541: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.244208: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 00:19:30.256194: Isomap START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.256362: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.258717: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.264791: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 00:19:30.271738: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.271942: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.27654: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.29163: embedding
> test_pipeop_isomap.R: 2026-02-28 00:19:30.292054: DONE
> test_pipeop_isomap.R: 2026-02-28 00:19:30.298554: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.298698: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.303582: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.318008: embedding
> test_pipeop_isomap.R: 2026-02-28 00:19:30.318457: DONE
> test_pipeop_isomap.R: 2026-02-28 00:19:30.346257: Isomap START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.346411: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.350998: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.384458: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 00:19:30.393824: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.394027: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.404176: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.483379: embedding
> test_pipeop_isomap.R: 2026-02-28 00:19:30.484537: DONE
> test_pipeop_isomap.R: 2026-02-28 00:19:30.516913: Isomap START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.51706: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.525675: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.531905: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 00:19:30.539845: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.540046: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.544599: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.559694: embedding
> test_pipeop_isomap.R: 2026-02-28 00:19:30.560181: DONE
> test_pipeop_isomap.R: 2026-02-28 00:19:30.594739: Isomap START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.59491: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.597457: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.603446: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 00:19:30.614861: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.615038: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.619481: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.634191: embedding
> test_pipeop_isomap.R: 2026-02-28 00:19:30.634588: DONE
> test_pipeop_isomap.R: 2026-02-28 00:19:30.653478: Isomap START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.653616: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.655921: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.661912: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 00:19:30.680023: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.680214: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.684589: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.699524: embedding
> test_pipeop_isomap.R: 2026-02-28 00:19:30.699939: DONE
> test_pipeop_isomap.R: 2026-02-28 00:19:30.718527: Isomap START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.718662: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.720889: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.726865: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 00:19:30.738309: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.738493: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.743111: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.758022: embedding
> test_pipeop_isomap.R: 2026-02-28 00:19:30.758464: DONE
> test_pipeop_isomap.R: 2026-02-28 00:19:30.777896: Isomap START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.778053: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.780388: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.786719: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 00:19:30.799769: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.79997: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.81101: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.8259: embedding
> test_pipeop_isomap.R: 2026-02-28 00:19:30.826375: DONE
> test_pipeop_isomap.R: 2026-02-28 00:19:30.84857: Isomap START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.848708: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.851096: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.857205: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 00:19:30.877262: Isomap START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.877471: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.880024: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.8861: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 00:19:30.891856: Isomap START
> test_pipeop_isomap.R: 2026-02-28 00:19:30.891968: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 00:19:30.89427: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 00:19:30.900145: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.5660356')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [408s/491s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-27 01:29:03.399151: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:03.399967: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:03.416103: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:03.434603: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:03.50995: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:03.510327: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:03.51764: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:03.574016: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:03.73668: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:03.73716: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:03.791667: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:03.89158: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:03.896006: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:03.930617: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:03.930925: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:04.023799: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:04.075842: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:04.07712: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:04.203259: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:04.203566: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:04.242487: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:04.388786: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:04.42908: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:04.429915: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:04.479302: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:04.768006: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:04.7743: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:04.960508: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:04.962507: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:04.973301: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:04.998662: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:05.059137: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:05.060964: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:05.106994: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:05.161383: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:05.162826: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:05.449233: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:05.449539: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:05.461642: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:05.484978: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:05.539906: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:05.540343: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:05.700235: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:05.801171: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:05.810546: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:05.950505: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:05.95081: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:05.95859: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:05.981624: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:06.056112: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:06.056597: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:06.121029: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:06.21348: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:06.214874: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:06.356239: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:06.356571: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:06.364343: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:06.451169: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:06.575458: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:06.575922: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:06.615386: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:06.711864: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:06.714633: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:06.936186: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:06.936555: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:06.954898: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:06.981995: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:07.047532: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:07.047965: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:07.074434: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:07.141736: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:07.143025: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:07.234886: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:07.23518: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:07.243438: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:07.265758: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:07.347316: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:07.347631: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:07.368454: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:07.394061: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:07.421289: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:07.421576: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:07.429301: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:07.459085: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [294s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-25 16:53:35.175809: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.176823: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.190077: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.212139: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:35.291769: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.292485: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.305269: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.327881: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:35.375384: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.376312: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.41152: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.455348: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:35.457078: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:35.504244: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.505022: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.525146: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.575999: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:35.577889: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:35.712001: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.712591: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.736012: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.841057: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:35.879798: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.880448: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.004977: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.243402: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:36.250602: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:36.487825: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.488453: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.498584: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.521234: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:36.569843: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.570687: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.593: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.64245: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:36.64431: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:36.858807: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.859413: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.870062: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.893007: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:36.96995: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.970851: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.995393: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.047838: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.050014: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:37.191469: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.192106: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.203523: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.224898: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:37.301394: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.302275: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.323626: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.360074: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.361463: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:37.492268: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.492909: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.502373: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.522678: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:37.594993: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.595875: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.617954: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.667016: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.668821: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:37.775062: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.775654: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.788062: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.810837: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:37.893541: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.894448: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.916797: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.954928: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.955997: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:38.059554: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:38.059993: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:38.067583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:38.08821: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:38.197578: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:38.198193: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:38.209329: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:38.225198: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:38.250183: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:38.250623: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:38.257674: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:38.277822: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64