Last updated on 2026-02-25 12:51:30 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 35.26 | 818.41 | 853.67 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 22.63 | 535.78 | 558.41 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 65.00 | 1204.62 | 1269.62 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 66.00 | 1373.30 | 1439.30 | OK | |
| r-devel-macos-arm64 | 0.10.0 | 8.00 | 122.00 | 130.00 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 40.00 | 593.00 | 633.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | OK | ||||
| r-release-linux-x86_64 | 0.10.0 | 33.69 | 744.27 | 777.96 | ERROR | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 36.00 | 540.00 | 576.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 119.00 | 127.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 28.00 | 1099.00 | 1127.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 52.00 | 665.00 | 717.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [320s/157s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-02-24 17:32:12.442871: Isomap START
> test_pipeop_isomap.R: 2026-02-24 17:32:12.443601: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:12.451955: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:12.465989: Classical Scaling
> test_pipeop_isomap.R: 2026-02-24 17:32:12.505101: Isomap START
> test_pipeop_isomap.R: 2026-02-24 17:32:12.505521: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:12.513376: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:12.527384: Classical Scaling
> test_pipeop_isomap.R: 2026-02-24 17:32:12.548577: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-24 17:32:12.54917: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:12.560991: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:12.593117: embedding
> test_pipeop_isomap.R: 2026-02-24 17:32:12.594176: DONE
> test_pipeop_isomap.R: 2026-02-24 17:32:12.615087: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-24 17:32:12.615498: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:12.627084: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:12.66096: embedding
> test_pipeop_isomap.R: 2026-02-24 17:32:12.662004: DONE
> test_pipeop_isomap.R: 2026-02-24 17:32:12.729419: Isomap START
> test_pipeop_isomap.R: 2026-02-24 17:32:12.729841: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:12.74149: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:12.817644: Classical Scaling
> test_pipeop_isomap.R: 2026-02-24 17:32:12.850194: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-24 17:32:12.850805: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:12.887985: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:13.061665: embedding
> test_pipeop_isomap.R: 2026-02-24 17:32:13.065781: DONE
> test_pipeop_isomap.R: 2026-02-24 17:32:13.18503: Isomap START
> test_pipeop_isomap.R: 2026-02-24 17:32:13.185437: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:13.191962: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:13.206986: Classical Scaling
> test_pipeop_isomap.R: 2026-02-24 17:32:13.233859: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-24 17:32:13.23448: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:13.247051: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:13.278863: embedding
> test_pipeop_isomap.R: 2026-02-24 17:32:13.280029: DONE
> test_pipeop_isomap.R: 2026-02-24 17:32:13.39159: Isomap START
> test_pipeop_isomap.R: 2026-02-24 17:32:13.391987: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:13.398019: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:13.412693: Classical Scaling
> test_pipeop_isomap.R: 2026-02-24 17:32:13.45493: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-24 17:32:13.455586: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:13.469181: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:13.501204: embedding
> test_pipeop_isomap.R: 2026-02-24 17:32:13.515719: DONE
> test_pipeop_isomap.R: 2026-02-24 17:32:13.584087: Isomap START
> test_pipeop_isomap.R: 2026-02-24 17:32:13.584505: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:13.591557: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:13.605142: Classical Scaling
> test_pipeop_isomap.R: 2026-02-24 17:32:13.647175: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-24 17:32:13.647764: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:13.66077: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:13.693316: embedding
> test_pipeop_isomap.R: 2026-02-24 17:32:13.694435: DONE
> test_pipeop_isomap.R: 2026-02-24 17:32:13.75739: Isomap START
> test_pipeop_isomap.R: 2026-02-24 17:32:13.757778: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:13.763628: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:13.776847: Classical Scaling
> test_pipeop_isomap.R: 2026-02-24 17:32:13.813484: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-24 17:32:13.814074: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:13.826098: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:13.859107: embedding
> test_pipeop_isomap.R: 2026-02-24 17:32:13.860105: DONE
> test_pipeop_isomap.R: 2026-02-24 17:32:13.921144: Isomap START
> test_pipeop_isomap.R: 2026-02-24 17:32:13.921547: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:13.927696: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:13.941076: Classical Scaling
> test_pipeop_isomap.R: 2026-02-24 17:32:13.981452: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-24 17:32:13.982025: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:14.007214: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:14.038527: embedding
> test_pipeop_isomap.R: 2026-02-24 17:32:14.039623: DONE
> test_pipeop_isomap.R: 2026-02-24 17:32:14.109793: Isomap START
> test_pipeop_isomap.R: 2026-02-24 17:32:14.110162: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:14.115961: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:14.129734: Classical Scaling
> test_pipeop_isomap.R: 2026-02-24 17:32:14.194056: Isomap START
> test_pipeop_isomap.R: 2026-02-24 17:32:14.19443: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:14.200853: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:14.214693: Classical Scaling
> test_pipeop_isomap.R: 2026-02-24 17:32:14.235593: Isomap START
> test_pipeop_isomap.R: 2026-02-24 17:32:14.235976: constructing knn graph
> test_pipeop_isomap.R: 2026-02-24 17:32:14.24243: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-24 17:32:14.256369: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 1.581235')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [467s/232s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr
> test_mlr_graphs_robustify.R: ecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-02-21 16:27:23.635833: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:23.636974: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:23.653038: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:23.672962: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:23.729758: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:23.732083: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:23.739977: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:23.758714: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:23.788171: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:23.788858: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:23.803783: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:23.87493: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:23.877091: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:23.908632: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:23.909111: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:23.922593: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:23.966992: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:23.968239: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:24.061839: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:24.062302: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:24.076416: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:24.247616: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:24.293709: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:24.294446: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:24.324841: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:24.530069: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:24.534756: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:24.72045: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:24.720993: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:24.728767: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:24.753672: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:24.799505: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:24.800246: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:24.821001: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:24.865273: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:24.86667: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:25.042469: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.042951: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.052777: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.07293: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:25.131777: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.132481: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.161797: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.20782: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:25.209244: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:25.310354: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.310858: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.320498: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.340105: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:25.39721: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.39793: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.413737: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.46076: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:25.462131: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:25.568256: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.568711: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.577977: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.59745: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:25.65322: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.653921: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.671183: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.716432: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:25.719504: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:25.807073: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.807546: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.816955: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.836938: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:25.909425: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-21 16:27:25.910203: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:25.925057: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:25.968886: embedding
> test_pipeop_isomap.R: 2026-02-21 16:27:25.97021: DONE
> test_pipeop_isomap.R: 2026-02-21 16:27:26.066372: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:26.068763: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:26.075994: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:26.095305: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:26.184378: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:26.184854: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:26.207201: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:26.226661: Classical Scaling
> test_pipeop_isomap.R: 2026-02-21 16:27:26.260902: Isomap START
> test_pipeop_isomap.R: 2026-02-21 16:27:26.261405: constructing knn graph
> test_pipeop_isomap.R: 2026-02-21 16:27:26.268448: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-21 16:27:26.287689: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 1.271345')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [111s/55s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-25 22:37:28.796742: Isomap START
> test_pipeop_isomap.R: 2026-02-25 22:37:28.797002: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:28.800008: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:28.806066: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 22:37:28.817413: Isomap START
> test_pipeop_isomap.R: 2026-02-25 22:37:28.817554: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:28.852231: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:28.858333: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 22:37:28.866295: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 22:37:28.86648: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:28.871195: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:28.885684: embedding
> test_pipeop_isomap.R: 2026-02-25 22:37:28.886059: DONE
> test_pipeop_isomap.R: 2026-02-25 22:37:28.892089: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 22:37:28.892237: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.089967: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.104636: embedding
> test_pipeop_isomap.R: 2026-02-25 22:37:29.105084: DONE
> test_pipeop_isomap.R: 2026-02-25 22:37:29.124826: Isomap START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.124973: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.129402: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.162656: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 22:37:29.171573: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.17177: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.180499: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.258519: embedding
> test_pipeop_isomap.R: 2026-02-25 22:37:29.259634: DONE
> test_pipeop_isomap.R: 2026-02-25 22:37:29.291679: Isomap START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.291813: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.294192: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.300316: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 22:37:29.313496: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.313677: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.317892: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.332732: embedding
> test_pipeop_isomap.R: 2026-02-25 22:37:29.333159: DONE
> test_pipeop_isomap.R: 2026-02-25 22:37:29.364896: Isomap START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.365042: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.367333: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.373601: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 22:37:29.386062: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.386277: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.391024: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.405653: embedding
> test_pipeop_isomap.R: 2026-02-25 22:37:29.406052: DONE
> test_pipeop_isomap.R: 2026-02-25 22:37:29.425493: Isomap START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.425672: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.428239: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.434346: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 22:37:29.447619: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.447936: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.452816: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.467487: embedding
> test_pipeop_isomap.R: 2026-02-25 22:37:29.467866: DONE
> test_pipeop_isomap.R: 2026-02-25 22:37:29.486921: Isomap START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.487059: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.495285: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.501375: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 22:37:29.51285: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.513082: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.51757: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.532326: embedding
> test_pipeop_isomap.R: 2026-02-25 22:37:29.532745: DONE
> test_pipeop_isomap.R: 2026-02-25 22:37:29.551099: Isomap START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.551223: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.55353: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.559594: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 22:37:29.571719: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.571909: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.576297: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.590874: embedding
> test_pipeop_isomap.R: 2026-02-25 22:37:29.591228: DONE
> test_pipeop_isomap.R: 2026-02-25 22:37:29.611183: Isomap START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.611311: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.613625: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.619608: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 22:37:29.636631: Isomap START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.636742: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.639032: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.644972: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 22:37:29.650565: Isomap START
> test_pipeop_isomap.R: 2026-02-25 22:37:29.650694: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 22:37:29.658597: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 22:37:29.664675: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [424s/554s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-16 12:42:03.448789: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.44991: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.51292: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.554752: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:03.685279: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.685995: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.700435: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.749001: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:03.792524: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.793396: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.86142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.974069: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:03.977724: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:04.056452: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.057232: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.082463: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:04.182457: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:04.18392: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:04.383877: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.384168: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.410482: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:04.59234: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:04.63203: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.632532: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.694128: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.319163: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:05.324606: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:05.652853: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:05.653286: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:05.663621: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.706464: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:05.735485: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:05.736029: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:05.768998: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.845539: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:05.847664: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:06.156447: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.157106: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.168529: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.203423: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:06.28129: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.282232: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.317968: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.413315: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:06.420353: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:06.640564: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.640883: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.68676: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.73773: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:06.867146: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.868756: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.933461: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.017234: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:07.020134: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:07.169741: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.170125: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.200641: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.233351: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:07.388062: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.388522: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.405289: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.499942: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:07.501318: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:07.637899: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.639234: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.651689: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.698978: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:07.940215: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.940981: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.083141: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.161899: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:08.16393: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:08.402617: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.403039: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.460106: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.502159: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:08.682978: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.683359: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.69142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.737656: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:08.763833: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.764318: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.7725: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.84466: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [294s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-23 19:32:17.417811: Isomap START
> test_pipeop_isomap.R: 2026-02-23 19:32:17.418795: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:17.433316: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:17.455938: Classical Scaling
> test_pipeop_isomap.R: 2026-02-23 19:32:17.527294: Isomap START
> test_pipeop_isomap.R: 2026-02-23 19:32:17.527908: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:17.538823: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:17.561154: Classical Scaling
> test_pipeop_isomap.R: 2026-02-23 19:32:17.603978: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-23 19:32:17.60461: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:17.626305: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:17.675649: embedding
> test_pipeop_isomap.R: 2026-02-23 19:32:17.677434: DONE
> test_pipeop_isomap.R: 2026-02-23 19:32:17.71452: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-23 19:32:17.715081: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:17.731874: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:17.780935: embedding
> test_pipeop_isomap.R: 2026-02-23 19:32:17.782721: DONE
> test_pipeop_isomap.R: 2026-02-23 19:32:17.900891: Isomap START
> test_pipeop_isomap.R: 2026-02-23 19:32:17.901532: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:17.925545: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:18.010519: Classical Scaling
> test_pipeop_isomap.R: 2026-02-23 19:32:18.068622: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-23 19:32:18.069542: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:18.113703: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:18.295153: embedding
> test_pipeop_isomap.R: 2026-02-23 19:32:18.30026: DONE
> test_pipeop_isomap.R: 2026-02-23 19:32:18.503855: Isomap START
> test_pipeop_isomap.R: 2026-02-23 19:32:18.504405: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:18.512921: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:18.535639: Classical Scaling
> test_pipeop_isomap.R: 2026-02-23 19:32:18.599186: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-23 19:32:18.600482: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:18.651453: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:18.702082: embedding
> test_pipeop_isomap.R: 2026-02-23 19:32:18.7036: DONE
> test_pipeop_isomap.R: 2026-02-23 19:32:18.895903: Isomap START
> test_pipeop_isomap.R: 2026-02-23 19:32:18.896352: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:18.903558: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:18.92477: Classical Scaling
> test_pipeop_isomap.R: 2026-02-23 19:32:19.019638: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-23 19:32:19.020833: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:19.046901: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:19.092179: embedding
> test_pipeop_isomap.R: 2026-02-23 19:32:19.093934: DONE
> test_pipeop_isomap.R: 2026-02-23 19:32:19.221296: Isomap START
> test_pipeop_isomap.R: 2026-02-23 19:32:19.221935: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:19.234618: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:19.257167: Classical Scaling
> test_pipeop_isomap.R: 2026-02-23 19:32:19.327912: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-23 19:32:19.328624: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:19.34766: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:19.38736: embedding
> test_pipeop_isomap.R: 2026-02-23 19:32:19.388618: DONE
> test_pipeop_isomap.R: 2026-02-23 19:32:19.48206: Isomap START
> test_pipeop_isomap.R: 2026-02-23 19:32:19.482712: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:19.494648: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:19.516743: Classical Scaling
> test_pipeop_isomap.R: 2026-02-23 19:32:19.577952: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-23 19:32:19.578605: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:19.594602: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:19.634575: embedding
> test_pipeop_isomap.R: 2026-02-23 19:32:19.636564: DONE
> test_pipeop_isomap.R: 2026-02-23 19:32:19.761705: Isomap START
> test_pipeop_isomap.R: 2026-02-23 19:32:19.762238: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:19.772991: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:19.792093: Classical Scaling
> test_pipeop_isomap.R: 2026-02-23 19:32:19.881265: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-23 19:32:19.882502: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:19.910437: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:19.979539: embedding
> test_pipeop_isomap.R: 2026-02-23 19:32:19.995088: DONE
> test_pipeop_isomap.R: 2026-02-23 19:32:20.141194: Isomap START
> test_pipeop_isomap.R: 2026-02-23 19:32:20.14181: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:20.152184: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:20.174398: Classical Scaling
> test_pipeop_isomap.R: 2026-02-23 19:32:20.288178: Isomap START
> test_pipeop_isomap.R: 2026-02-23 19:32:20.288836: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:20.300678: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:20.322513: Classical Scaling
> test_pipeop_isomap.R: 2026-02-23 19:32:20.359254: Isomap START
> test_pipeop_isomap.R: 2026-02-23 19:32:20.359889: constructing knn graph
> test_pipeop_isomap.R: 2026-02-23 19:32:20.371307: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-23 19:32:20.390879: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64