Last updated on 2026-08-02 17:51:51 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.5 | 44.42 | 61.24 | 105.66 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.5 | 31.91 | 53.35 | 85.26 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.5 | 71.00 | 92.29 | 163.29 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.3.5 | 34.00 | 48.14 | 82.14 | OK | |
| r-devel-windows-x86_64 | 1.3.5 | 62.00 | 984.00 | 1046.00 | OK | |
| r-patched-linux-x86_64 | 1.3.5 | 41.66 | 56.99 | 98.65 | OK | |
| r-release-linux-x86_64 | 1.3.5 | 43.46 | 57.80 | 101.26 | OK | |
| r-release-macos-arm64 | 1.3.5 | 10.00 | 19.00 | 29.00 | OK | |
| r-release-macos-x86_64 | 1.3.5 | 27.00 | 63.00 | 90.00 | OK | |
| r-release-windows-x86_64 | 1.3.5 | 61.00 | 971.00 | 1032.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.5 | 7.00 | 21.00 | 28.00 | OK | |
| r-oldrel-macos-x86_64 | 1.3.5 | 26.00 | 84.00 | 110.00 | OK | |
| r-oldrel-windows-x86_64 | 1.3.5 | 66.00 | 1228.00 | 1294.00 | OK |
Version: 1.3.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ondisc)
>
> test_check("ondisc")
[1] "seed: 183907"
[1] "Generating example dataset 1."
[1] "Testing import from cellranger for dataset 1"
Round 1/2 processing of the input files.
Processing file 1 of 2.
Processing file 2 of 2.
Round 2/2 processing of the input files.
Processing file 1 of 2. Computing cellwise covariates. Writing to disk.
Processing file 2 of 2. Computing cellwise covariates. Writing to disk.
Saving _problems/test-import_from_cellranger_v2-130.R
[1] "Generating example dataset 1."
[1] "Testing import from R matrix for dataset 1"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 162 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-import_from_cellranger_v2.R:130:11'): import data from cellranger v2 ──
Error in `base::colSums(x, na.rm = na.rm, dims = dims, ...)`: 'x' must be an array of at least two dimensions
Backtrace:
▆
1. ├─Matrix::colSums(...) at test-import_from_cellranger_v2.R:130:11
2. └─Matrix::colSums(...)
3. └─base::colSums(x, na.rm = na.rm, dims = dims, ...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 162 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.5
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0YG1ru’ ‘~/tmp/scratch/Rtmp19w8mu’
‘~/tmp/scratch/Rtmp1YKax4’ ‘~/tmp/scratch/Rtmp2YpS6q’
‘~/tmp/scratch/Rtmp2qnR2d’ ‘~/tmp/scratch/Rtmp2rqwLf’
‘~/tmp/scratch/Rtmp3V4T0A’ ‘~/tmp/scratch/Rtmp3Vqw28’
‘~/tmp/scratch/Rtmp4VQT3W’ ‘~/tmp/scratch/Rtmp7WvZa4’
‘~/tmp/scratch/Rtmp8E4pwJ’ ‘~/tmp/scratch/Rtmp8l4O6J’
‘~/tmp/scratch/Rtmp99aNqK’ ‘~/tmp/scratch/Rtmp9OBOwA’
‘~/tmp/scratch/Rtmp9pTzo4’ ‘~/tmp/scratch/RtmpA9U9ai’
‘~/tmp/scratch/RtmpAaMTS1’ ‘~/tmp/scratch/RtmpAgspU4’
‘~/tmp/scratch/RtmpAqlHjA’ ‘~/tmp/scratch/RtmpAuSes1’
‘~/tmp/scratch/RtmpBFTNOO’ ‘~/tmp/scratch/RtmpBNWGWq’
‘~/tmp/scratch/RtmpCA0XO4’ ‘~/tmp/scratch/RtmpDi7oO2’
‘~/tmp/scratch/RtmpF97bVs’ ‘~/tmp/scratch/RtmpFJkTa6’
‘~/tmp/scratch/RtmpGd4jjF’ ‘~/tmp/scratch/RtmpGr5Ih5’
‘~/tmp/scratch/RtmpHBAhf7’ ‘~/tmp/scratch/RtmpIkdFhz’
‘~/tmp/scratch/RtmpIsELzJ’ ‘~/tmp/scratch/RtmpJ7kfo3’
‘~/tmp/scratch/RtmpJFsnLd’ ‘~/tmp/scratch/RtmpJR5cL1’
‘~/tmp/scratch/RtmpJjbM6o’ ‘~/tmp/scratch/RtmpJsqk3J’
‘~/tmp/scratch/RtmpKbwDLC’ ‘~/tmp/scratch/RtmpKlIykj’
‘~/tmp/scratch/RtmpKnhOld’ ‘~/tmp/scratch/RtmpLIjMHC’
‘~/tmp/scratch/RtmpMXG7he’ ‘~/tmp/scratch/RtmpNpJawA’
‘~/tmp/scratch/RtmpNvsgb9’ ‘~/tmp/scratch/RtmpNy66ml’
‘~/tmp/scratch/RtmpO79M97’ ‘~/tmp/scratch/RtmpO7jbqA’
‘~/tmp/scratch/RtmpOD1NDi’ ‘~/tmp/scratch/RtmpOk27Ph’
‘~/tmp/scratch/RtmpPmurWJ’ ‘~/tmp/scratch/RtmpQDaCp0’
‘~/tmp/scratch/RtmpQNIiEv’ ‘~/tmp/scratch/RtmpQhpGYe’
‘~/tmp/scratch/RtmpQkWNrc’ ‘~/tmp/scratch/RtmpQrBVVO’
‘~/tmp/scratch/RtmpRPLC6q’ ‘~/tmp/scratch/RtmpSWDSGg’
‘~/tmp/scratch/RtmpShVEcX’ ‘~/tmp/scratch/RtmpTaBc03’
‘~/tmp/scratch/RtmpTnJLAF’ ‘~/tmp/scratch/RtmpUFnXqi’
‘~/tmp/scratch/RtmpUMQPaI’ ‘~/tmp/scratch/RtmpUdLt3K’
‘~/tmp/scratch/RtmpVouAXf’ ‘~/tmp/scratch/RtmpXQYvU9’
‘~/tmp/scratch/RtmpXXdku0’ ‘~/tmp/scratch/RtmpXcixVU’
‘~/tmp/scratch/RtmpXo0hw1’ ‘~/tmp/scratch/RtmpXtixWC’
‘~/tmp/scratch/RtmpanfUXC’ ‘~/tmp/scratch/Rtmpap9RjX’
‘~/tmp/scratch/Rtmpc0oFSW’ ‘~/tmp/scratch/Rtmpchnz4Q’
‘~/tmp/scratch/Rtmpd2rIKR’ ‘~/tmp/scratch/RtmpdF89ud’
‘~/tmp/scratch/RtmpdPZaHk’ ‘~/tmp/scratch/RtmpdwsjGq’
‘~/tmp/scratch/Rtmpe2bl0p’ ‘~/tmp/scratch/Rtmpe9cwiX’
‘~/tmp/scratch/RtmpeAMKDC’ ‘~/tmp/scratch/Rtmpenu19y’
‘~/tmp/scratch/Rtmpf3GGAf’ ‘~/tmp/scratch/RtmpfG7E8G’
‘~/tmp/scratch/RtmpfQVcYG’ ‘~/tmp/scratch/Rtmph0T6os’
‘~/tmp/scratch/RtmphF7X7R’ ‘~/tmp/scratch/RtmphKp4g3’
‘~/tmp/scratch/RtmphUCMhx’ ‘~/tmp/scratch/RtmpiFUoYh’
‘~/tmp/scratch/RtmpiL16CJ’ ‘~/tmp/scratch/Rtmpj3FZcf’
‘~/tmp/scratch/Rtmpk61AYQ’ ‘~/tmp/scratch/Rtmpk7axVj’
‘~/tmp/scratch/RtmpkZgNv0’ ‘~/tmp/scratch/RtmpkirMCP’
‘~/tmp/scratch/Rtmpkz3IvG’ ‘~/tmp/scratch/Rtmpl1MtYT’
‘~/tmp/scratch/RtmplIy27H’ ‘~/tmp/scratch/RtmplLbvaM’
‘~/tmp/scratch/RtmpliqYo5’ ‘~/tmp/scratch/RtmpmaHTaf’
‘~/tmp/scratch/RtmpnKrbgM’ ‘~/tmp/scratch/Rtmpo7KWxK’
‘~/tmp/scratch/Rtmpo83rAk’ ‘~/tmp/scratch/RtmpoT2bsp’
‘~/tmp/scratch/RtmpoU3JmC’ ‘~/tmp/scratch/RtmpqVYJYF’
‘~/tmp/scratch/RtmpqjLwuy’ ‘~/tmp/scratch/Rtmpr7lH73’
‘~/tmp/scratch/RtmprLTRDU’ ‘~/tmp/scratch/Rtmps6MFoh’
‘~/tmp/scratch/RtmpszOA5f’ ‘~/tmp/scratch/RtmpsznvJ3’
‘~/tmp/scratch/RtmptD65RS’ ‘~/tmp/scratch/RtmptGX4Cq’
‘~/tmp/scratch/RtmptMquvO’ ‘~/tmp/scratch/RtmptuNKxh’
‘~/tmp/scratch/Rtmpu02HGZ’ ‘~/tmp/scratch/RtmpufGWjb’
‘~/tmp/scratch/Rtmpw4ZILb’ ‘~/tmp/scratch/RtmpwSUirI’
‘~/tmp/scratch/RtmpwrTVmG’ ‘~/tmp/scratch/Rtmpx7OTDD’
‘~/tmp/scratch/RtmpxJaXJs’ ‘~/tmp/scratch/RtmpxZbuWr’
‘~/tmp/scratch/Rtmpxc7Xxq’ ‘~/tmp/scratch/Rtmpxvm6bO’
‘~/tmp/scratch/RtmpyD9hfP’ ‘~/tmp/scratch/RtmpyevLGw’
‘~/tmp/scratch/RtmpzZiQJY’ ‘~/tmp/scratch/RtmpzoB8WH’
‘~/tmp/scratch/ccy3SMdq.s’ ‘~/tmp/scratch/xvfb-run.2xE1w2’
‘~/tmp/scratch/xvfb-run.3fdl5o’ ‘~/tmp/scratch/xvfb-run.3msFqe’
‘~/tmp/scratch/xvfb-run.3zbymm’ ‘~/tmp/scratch/xvfb-run.4aQXh9’
‘~/tmp/scratch/xvfb-run.7BSEiZ’ ‘~/tmp/scratch/xvfb-run.93DzBJ’
‘~/tmp/scratch/xvfb-run.AASAMu’ ‘~/tmp/scratch/xvfb-run.ASoa4c’
‘~/tmp/scratch/xvfb-run.Av2gSu’ ‘~/tmp/scratch/xvfb-run.AvMj0n’
‘~/tmp/scratch/xvfb-run.B9uYV5’ ‘~/tmp/scratch/xvfb-run.CCtoKB’
‘~/tmp/scratch/xvfb-run.CetCQy’ ‘~/tmp/scratch/xvfb-run.CfxKkN’
‘~/tmp/scratch/xvfb-run.DRPukU’ ‘~/tmp/scratch/xvfb-run.GZUwr6’
‘~/tmp/scratch/xvfb-run.GnOomk’ ‘~/tmp/scratch/xvfb-run.ICutF6’
‘~/tmp/scratch/xvfb-run.JjvPQz’ ‘~/tmp/scratch/xvfb-run.MXA4DD’
‘~/tmp/scratch/xvfb-run.OMn764’ ‘~/tmp/scratch/xvfb-run.On99zj’
‘~/tmp/scratch/xvfb-run.PiiyKz’ ‘~/tmp/scratch/xvfb-run.TBlARh’
‘~/tmp/scratch/xvfb-run.URhql9’ ‘~/tmp/scratch/xvfb-run.UjqIk7’
‘~/tmp/scratch/xvfb-run.Wcca95’ ‘~/tmp/scratch/xvfb-run.X5Zg8I’
‘~/tmp/scratch/xvfb-run.YNNhYw’ ‘~/tmp/scratch/xvfb-run.blNljS’
‘~/tmp/scratch/xvfb-run.dSbPBE’ ‘~/tmp/scratch/xvfb-run.eB3Es2’
‘~/tmp/scratch/xvfb-run.fHrXI9’ ‘~/tmp/scratch/xvfb-run.fxCckC’
‘~/tmp/scratch/xvfb-run.i1N8IS’ ‘~/tmp/scratch/xvfb-run.jKEJbC’
‘~/tmp/scratch/xvfb-run.nrwQH4’ ‘~/tmp/scratch/xvfb-run.oa7tHa’
‘~/tmp/scratch/xvfb-run.sQF3ML’ ‘~/tmp/scratch/xvfb-run.sc6wwp’
‘~/tmp/scratch/xvfb-run.u7keZc’ ‘~/tmp/scratch/xvfb-run.uRTONE’
‘~/tmp/scratch/xvfb-run.w0C9Lg’ ‘~/tmp/scratch/xvfb-run.wmix6n’
‘~/tmp/scratch/xvfb-run.wtr41f’ ‘~/tmp/scratch/xvfb-run.yaPlCH’
‘~/tmp/scratch/xvfb-run.ydLeTE’ ‘~/tmp/scratch/xvfb-run.yqzmXf’
‘~/tmp/scratch/xvfb-run.zM7RCC’ ‘~/tmp/scratch/xvfb-run.zbjhy0’
‘~/tmp/scratch/xvfb-run.zuqzk1’
‘/dev/shm/sm_segment.gimli1.1001.1b030000.0’
‘/dev/shm/sm_segment.gimli1.1001.3ab70000.0’
‘/dev/shm/sm_segment.gimli1.1001.4aa40000.0’
‘/dev/shm/sm_segment.gimli1.1001.5f340000.0’
‘/dev/shm/sm_segment.gimli1.1001.61110000.0’
‘/dev/shm/sm_segment.gimli1.1001.95de0000.0’
‘~/.cache/pocl/uncached/tempfile_JzlsdT’
‘~/.cache/pocl/uncached/tempfile_SxHbm8’
‘~/.cache/pocl/uncached/tempfile_hf6PN2’
‘~/.cache/pocl/uncached/tempfile_m3LJ8f’
‘~/.cache/pocl/uncached/tempfile_n67ybZ’
‘~/.cache/pocl/uncached/tempfile_v1K9lW’
Flavor: r-devel-linux-x86_64-debian-gcc