Last updated on 2026-03-11 16:53:44 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.25 | 4.63 | 55.12 | 59.75 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.25 | 3.49 | 35.84 | 39.33 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.25 | 8.00 | 80.23 | 88.23 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.25 | 8.00 | 95.69 | 103.69 | OK | |
| r-devel-macos-arm64 | 1.0.25 | 1.00 | 42.00 | 43.00 | OK | |
| r-devel-windows-x86_64 | 1.0.25 | 5.00 | 104.00 | 109.00 | OK | |
| r-patched-linux-x86_64 | 1.0.25 | 5.13 | 49.94 | 55.07 | OK | |
| r-release-linux-x86_64 | 1.0.25 | 4.32 | 49.48 | 53.80 | OK | |
| r-release-macos-arm64 | 1.0.25 | 1.00 | 38.00 | 39.00 | OK | |
| r-release-macos-x86_64 | 1.0.25 | 3.00 | 78.00 | 81.00 | OK | |
| r-release-windows-x86_64 | 1.0.25 | 6.00 | 79.00 | 85.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.25 | 1.00 | 47.00 | 48.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.25 | 3.00 | 123.00 | 126.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.25 | 8.00 | 98.00 | 106.00 | OK |
Version: 1.0.25
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pmparser)
>
> test_check('pmparser')
Saving _problems/test_modify_pubmed_db_dup-69.R
Saving _problems/test_modify_pubmed_db_std-24.R
Saving _problems/test_modify_pubmed_db_std-44.R
[ FAIL 3 | WARN 0 | SKIP 4 | PASS 95 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test_get_citation.R:4:3', 'test_get_citation.R:13:3',
'test_get_pubmed_files.R:7:3', 'test_get_pubmed_files.R:20:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_modify_pubmed_db_dup.R:67:3'): modifyPubmedDb update is unique ──
Error in `{ dNow = getRemoteFilenames(glue("{remoteDir}/{subDir}/"), pattern) dNow[, `:=`(sub_dir, subDir)] }`: task 1 failed - "Recv failure: Connection reset by peer"
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:67:3
2. └─pmparser:::getPubmedFileInfo(localDir, subDirs = subDir, con = conTmp)
3. └─foreach(subDir = subDirs, .combine = rbind) %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
── Error ('test_modify_pubmed_db_std.R:22:3'): modifyPubmedDb create matches standard ──
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE) { if (!is.character(type)) { i = match(type, CURLcodeValues) typeName = if (is.na(i)) character() else names(CURLcodeValues)[i] } typeName = gsub("^CURLE_", "", typeName) fun = (if (asError) stop else warning) fun(structure(list(message = msg, call = sys.call()), class = c(typeName, "GenericCurlError", "error", "condition"))) }(35L, "Recv failure: Connection reset by peer", TRUE)`: Recv failure: Connection reset by peer
Backtrace:
▆
1. ├─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:22:3
2. │ └─pmparser:::getReadme(con = con)
3. │ └─RCurl::getURL(glue("{remoteDir}/{filename}"))
4. │ └─RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
5. └─RCurl (local) `<fn>`(35L, "Recv failure: Connection reset by peer", TRUE)
── Error ('test_modify_pubmed_db_std.R:42:3'): modifyPubmedDb update matches standard ──
Error in `{ dNow = getRemoteFilenames(glue("{remoteDir}/{subDir}/"), pattern) dNow[, `:=`(sub_dir, subDir)] }`: task 1 failed - "Recv failure: Connection reset by peer"
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:42:3
2. └─pmparser:::getPubmedFileInfo(localDir, subDirs = subDir, con = conTmp)
3. └─foreach(subDir = subDirs, .combine = rbind) %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
[ FAIL 3 | WARN 0 | SKIP 4 | PASS 95 ]
Error:
! Test failures.
Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc