Last updated on 2026-04-18 17:51:50 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| anndata | 14 | ||
| babelwhale | 2 | 12 | |
| diffusionMap | 2 | 12 | |
| dyndimred | 5 | 9 | |
| dyngen | 1 | 3 | 10 |
| dynparam | 5 | 9 | |
| dynutils | 1 | 13 | |
| dynwrap | 14 | ||
| funkyheatmap | 14 | ||
| GillespieSSA | 14 | ||
| GillespieSSA2 | 1 | 4 | 9 |
| incgraph | 1 | 13 | |
| lmds | 7 | 7 | |
| princurve | 1 | 2 | 11 |
| qsub | 2 | 12 |
Current CRAN status: OK: 14
Current CRAN status: NOTE: 2, OK: 12
Version: 1.2.0
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter), Joel Nitta [aut] (<https://orcid.org/0000-0003-4719-7472>, joelnitta)’
Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter), Joel Nitta [aut] (ORCID: <https://orcid.org/0000-0003-4719-7472>, github: joelnitta)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 2, OK: 12
Version: 1.2.0
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Joseph Richards [aut] (joeyrichar), Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’
Authors@R: ‘Joseph Richards [aut] (github: joeyrichar), Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 5, OK: 9
Version: 1.0.4
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘lle’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.4
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 3, OK: 10
Version: 1.1.1
Check: tests
Result: ERROR
Running 'testthat.R' [25s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> test_check("dyngen")
Loading required package: dyngen
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2026_04_17_01_50_00_1722/RtmpMngTfg/file6d0c3f703706/gillespie/sourceCpp-x86_64-w64-mingw32-1.1.1/sourcecpp_6d0c1f2ee2f'
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.6/Rcpp/include" -I"D:/temp/2026_04_17_01_50_00_1722/RtmpMngTfg/file6d0c3f703706/gillespie/sourceCpp-x86_64-w64-mingw32-1.1.1" -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file6d0c92155ab.cpp -o file6d0c92155ab.o
In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp.h:49,
from file6d0c92155ab.cpp:1:
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/Function.h: In constructor 'Rcpp::Function_Impl<StoragePolicy>::Function_Impl(const std::string&, const std::string&)':
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/Function.h:75:65: error: 'R_NamespaceRegistry' was not declared in this scope
75 | Shield<SEXP> env(R_getVarEx(Rf_install(ns.c_str()), R_NamespaceRegistry, FALSE, R_UnboundValue));
| ^~~~~~~~~~~~~~~~~~~
make[1]: *** [D:/RCompile/recent/R/etc/x64/Makeconf:304: file6d0c92155ab.o] Error 1
make[1]: Leaving directory '/d/temp/2026_04_17_01_50_00_1722/RtmpMngTfg/file6d0c3f703706/gillespie/sourceCpp-x86_64-w64-mingw32-1.1.1/sourcecpp_6d0c1f2ee2f'
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 64 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-generate_dataset.R:27:1'): (code run outside of `test_that()`) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map(rcpp_codes, RcppXPtrUtils::cppXPtr, cacheDir = tmpdir, includes = if (hardcode_params) paste0("#define CONST_", names(params), " ", params, "\n", collapse = "") else character())`: ℹ In index: 1.
Caused by error in `sourceCpp()`:
! Error 1 occurred building shared library.
Backtrace:
▆
1. ├─dyngen::generate_dataset(init, make_plots = TRUE) at test-generate_dataset.R:27:1
2. │ ├─dyngen::generate_experiment(generate_cells(generate_gold_standard(generate_kinetics(generate_feature_network(generate_tf_network(model))))))
3. │ ├─dyngen::generate_cells(generate_gold_standard(generate_kinetics(generate_feature_network(generate_tf_network(model)))))
4. │ └─dyngen::generate_gold_standard(generate_kinetics(generate_feature_network(generate_tf_network(model))))
5. │ └─dyngen:::.generate_gold_precompile_reactions(model)
6. │ └─GillespieSSA2::compile_reactions(...)
7. │ └─purrr::map(...)
8. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─RcppXPtrUtils (local) .f(.x[[i]], ...)
13. │ └─Rcpp::cppFunction(...)
14. │ └─Rcpp::sourceCpp(...)
15. │ └─base::stop("Error ", status, " occurred building shared library.")
16. └─base::.handleSimpleError(...)
17. └─purrr (local) h(simpleError(msg, call))
18. └─cli::cli_abort(...)
19. └─rlang::abort(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 64 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘anndataR’
Flavor: r-oldrel-macos-arm64
Version: 1.1.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘anndataR’
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 9
Version: 1.0.2
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 13
Version: 1.0.12
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: ERROR: 1, NOTE: 4, OK: 9
Version: 0.3.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-windows-x86_64
Version: 0.3.0
Check: installed package size
Result: NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 1.7Mb
libs 3.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, OK: 13
Version: 1.0.3
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-windows-x86_64
Current CRAN status: NOTE: 7, OK: 7
Version: 0.1.0
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘Matrix’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 2, OK: 11
Version: 2.1.6
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.1.6
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (HenrikBengtsson), Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’
Authors@R: ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (ORCID: <https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (github: HenrikBengtsson), Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.1.6
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 12
Version: 1.1.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.1.3
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc