Processing and analysis of amplicon sequencing data, with a
primary focus on eDNA metabarcoding while remaining applicable to
general targeted sequencing workflows. The package provides a
user-friendly interface for core 'VSEARCH' (Rognes et al. (2016),
<doi:10.7717/peerj.2584>) functions, extended with dedicated tools for
visualization and parameter tuning.
| Version: |
1.2.1 |
| Depends: |
R (≥ 4.1) |
| Imports: |
ape (≥ 5.8.1), cowplot (≥ 1.1.3), dplyr, ggExtra (≥
0.10.1), ggplot2 (≥ 3.5.1), microseq (≥ 2.1.6), RColorBrewer (≥ 1.1.3), readr (≥ 2.1.5), stats, stringr (≥ 1.5.1), tibble (≥ 3.2.1), tidyr (≥ 1.3.1), tidyselect (≥ 1.2.1) |
| Suggests: |
phyloseq, rmarkdown, testthat (≥ 3.0.0), withr (≥ 3.0.2) |
| Published: |
2026-11-04 |
| DOI: |
10.32614/CRAN.package.Rsearch |
| Author: |
Cassandra Stamsaas [cre, aut],
Lars Snipen [aut],
Torbjørn Rognes [aut],
Hilde Vinje [aut] |
| Maintainer: |
Cassandra Stamsaas <cassandra.stamsaas at nmbu.no> |
| BugReports: |
https://github.com/CassandraHjo/Rsearch/issues/ |
| License: |
GPL (≥ 3) |
| URL: |
https://cassandrahjo.github.io/Rsearch/,
https://github.com/CassandraHjo/Rsearch/ |
| NeedsCompilation: |
no |
| Citation: |
Rsearch citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
Rsearch results |