Pairwise sequence alignment from one portable C++17 core: edit-distance (Levenshtein / WFA-equivalent) and Smith-Waterman local alignment, both with score and CIGAR reconstruction. The core builds and runs anywhere (it is the CPU backend, so it needs no GPU toolchain); the wavefront/GPU backend (ROCm/CUDA) computes the same results with acceleration and is tracked in the sibling C++ repository. A batch API aligns many pairs in one call and reports how many were resolved, so silent under-serving is impossible. Designed to slot into data.frame/tibble pipelines.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | Rcpp |
| LinkingTo: | Rcpp |
| Suggests: | testthat (≥ 3.0.0), knitr, rmarkdown, spelling |
| Published: | 2026-09-24 |
| DOI: | 10.32614/CRAN.package.genoaligner (may not be active yet) |
| Author: | Angel Robles-Fernandez [aut, cre] |
| Maintainer: | Angel Robles-Fernandez <a.l.robles.fernandez at gmail.com> |
| BugReports: | https://github.com/alrobles/genoaligner-r/issues |
| License: | MIT + file LICENSE |
| Copyright: | see file COPYRIGHTS |
| URL: | https://github.com/alrobles/genoaligner-r, https://alrobles.github.io/genoaligner-r/ |
| NeedsCompilation: | yes |
| SystemRequirements: | C++17 |
| Language: | en-US |
| Materials: | NEWS |
| CRAN checks: | genoaligner results |
| Reference manual: | genoaligner.html , genoaligner.pdf |
| Package source: | genoaligner_1.0.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
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