scShardSplitRef: Build Custom Reference Genome for Single-Cell Multiome ATAC and Gene Expression Data of Large-Genome Species

Provides utilities that enable researchers to build custom references for the Multiome ATAC Gene Expression sequencing data for large-genome species without manual intervention.

Version: 0.1.0
Depends: R (≥ 4.3.0)
Imports: cli, rlang, stringi, utils, withr
Suggests: knitr, rmarkdown, roxyglobals, testthat (≥ 3.0.0)
Published: 2026-07-23
DOI: 10.32614/CRAN.package.scShardSplitRef (may not be active yet)
Author: Irina Kuznetsova ORCID iD [aut, cre], Luke Pembleton ORCID iD [aut], Luca Curci ORCID iD [aut], Adam H. Sparks ORCID iD [aut], Curtin University ROR ID [fnd, cph], Grains Research and Development Corporation ROR ID [fnd, cph] (GRDC Project CUR2210-005OPX (AAGI-CU))
Maintainer: Irina Kuznetsova <irina.kuznetsova at curtin.edu.au>
License: GPL (≥ 3)
NeedsCompilation: no
Materials: README, NEWS
CRAN checks: scShardSplitRef results

Documentation:

Reference manual: scShardSplitRef.html , scShardSplitRef.pdf
Vignettes: scShardSplitRef: Getting Started (source, R code)
scShardSplitRef: Algorithm Description (source, R code)

Downloads:

Package source: scShardSplitRef_0.1.0.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): scShardSplitRef_0.1.0.tgz, r-oldrel (arm64): scShardSplitRef_0.1.0.tgz, r-release (x86_64): scShardSplitRef_0.1.0.tgz, r-oldrel (x86_64): scShardSplitRef_0.1.0.tgz

Linking:

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