Derives stratified prevalence tables from the condition, procedure, and drug records in OMOP CDM (Observational Medical Outcomes Partnership Common Data Model) databases, computes log2 prevalence ratios between paired datasets, and synthesizes them via random-effects meta-analysis at multiple aggregation levels (year, age group, and sex). Between-study variance is estimated with the Paule-Mandel method, as described in Paule and Mandel (1982) <doi:10.6028/jres.087.022>.
| Version: | 0.2.1 |
| Depends: | R (≥ 4.1.0) |
| Imports: | dplyr (≥ 1.1.0), dbplyr (≥ 2.3.0), DBI (≥ 1.2.0), CDMConnector (≥ 2.0.0), omopgenerics (≥ 1.3.0), tibble, tidyr, cli, rlang, shiny, ggplot2, ggiraph, ggtext, scales, grDevices, stats, readr (≥ 2.0.0), meta (≥ 6.0.0) |
| Suggests: | testthat (≥ 3.0.0), duckdb (≥ 0.9.0), RPostgres, CohortConstructor (≥ 0.6.0), DT, shinycssloaders, knitr, rmarkdown |
| Published: | 2026-09-04 |
| DOI: | 10.32614/CRAN.package.syrona |
| Author: | Maarja Pajusalu [aut, cre] |
| Maintainer: | Maarja Pajusalu <maarja.pajusalu at ut.ee> |
| BugReports: | https://github.com/HealthInformaticsUT/Syrona/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/HealthInformaticsUT/Syrona |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README, NEWS |
| CRAN checks: | syrona results |
| Reference manual: | syrona.html , syrona.pdf |
| Vignettes: |
a00_introduction (source, R code) a01_extraction (source, R code) a02_comparison (source, R code) a03_cohorts (source, R code) a04_walkthrough (source, R code) |
| Package source: | syrona_0.2.1.tar.gz |
| Windows binaries: | r-devel: syrona_0.2.1.zip, r-release: not available, r-oldrel: syrona_0.2.1.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): syrona_0.2.1.tgz, r-release (x86_64): syrona_0.2.1.tgz, r-oldrel (x86_64): syrona_0.2.1.tgz |
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