Last updated on 2026-03-11 16:54:09 CET.
| Package | ERROR | OK |
|---|---|---|
| deltaccd | 14 | |
| limorhyde | 2 | 12 |
| limorhyde2 | 14 | |
| phers | 14 | |
| pmparser | 1 | 13 |
| simphony | 14 | |
| spectr | 1 | 13 |
| tipa | 14 |
Current CRAN status: OK: 14
Current CRAN status: ERROR: 2, OK: 12
Version: 1.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:21-29 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'org.Mm.eg.db'
---
Backtrace:
▆
1. └─base::library("org.Mm.eg.db")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
there is no package called 'org.Mm.eg.db'
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 1.0.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘org.Mm.eg.db’
Flavor: r-oldrel-macos-arm64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: ERROR: 1, OK: 13
Version: 1.0.25
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pmparser)
>
> test_check('pmparser')
Saving _problems/test_modify_pubmed_db_dup-69.R
Saving _problems/test_modify_pubmed_db_std-24.R
Saving _problems/test_modify_pubmed_db_std-44.R
[ FAIL 3 | WARN 0 | SKIP 4 | PASS 95 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test_get_citation.R:4:3', 'test_get_citation.R:13:3',
'test_get_pubmed_files.R:7:3', 'test_get_pubmed_files.R:20:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_modify_pubmed_db_dup.R:67:3'): modifyPubmedDb update is unique ──
Error in `{ dNow = getRemoteFilenames(glue("{remoteDir}/{subDir}/"), pattern) dNow[, `:=`(sub_dir, subDir)] }`: task 1 failed - "Recv failure: Connection reset by peer"
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:67:3
2. └─pmparser:::getPubmedFileInfo(localDir, subDirs = subDir, con = conTmp)
3. └─foreach(subDir = subDirs, .combine = rbind) %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
── Error ('test_modify_pubmed_db_std.R:22:3'): modifyPubmedDb create matches standard ──
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE) { if (!is.character(type)) { i = match(type, CURLcodeValues) typeName = if (is.na(i)) character() else names(CURLcodeValues)[i] } typeName = gsub("^CURLE_", "", typeName) fun = (if (asError) stop else warning) fun(structure(list(message = msg, call = sys.call()), class = c(typeName, "GenericCurlError", "error", "condition"))) }(35L, "Recv failure: Connection reset by peer", TRUE)`: Recv failure: Connection reset by peer
Backtrace:
▆
1. ├─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:22:3
2. │ └─pmparser:::getReadme(con = con)
3. │ └─RCurl::getURL(glue("{remoteDir}/{filename}"))
4. │ └─RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
5. └─RCurl (local) `<fn>`(35L, "Recv failure: Connection reset by peer", TRUE)
── Error ('test_modify_pubmed_db_std.R:42:3'): modifyPubmedDb update matches standard ──
Error in `{ dNow = getRemoteFilenames(glue("{remoteDir}/{subDir}/"), pattern) dNow[, `:=`(sub_dir, subDir)] }`: task 1 failed - "Recv failure: Connection reset by peer"
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:42:3
2. └─pmparser:::getPubmedFileInfo(localDir, subDirs = subDir, con = conTmp)
3. └─foreach(subDir = subDirs, .combine = rbind) %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
[ FAIL 3 | WARN 0 | SKIP 4 | PASS 95 ]
Error:
! Test failures.
Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 14
Current CRAN status: ERROR: 1, OK: 13
Version: 1.0.1
Check: tests
Result: ERROR
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(spectr)
>
> test_check('spectr')
Saving _problems/test_pgram-15.R
Saving _problems/test_pgram-24.R
Saving _problems/test_pgram-33.R
Saving _problems/test_pgram-41.R
Saving _problems/test_pgram-49.R
Saving _problems/test_spectr-15.R
Saving _problems/test_spectr-24.R
Saving _problems/test_spectr-33.R
Saving _problems/test_spectr-42.R
Saving _problems/test_spectr-51.R
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 3 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pgram.R:15:3'): CSP greedy ─────────────────────────────────────
Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/qs/libs/x64/qs.dll':
LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden.
Backtrace:
▆
1. └─base::loadNamespace(x) at test_pgram.R:15:3
2. └─base::library.dynam(lib, package, package.lib)
3. └─base::dyn.load(file, DLLpath = DLLpath, ...)
4. └─base (local) inDL(x, as.logical(local), as.logical(now), ...)
── Error ('test_pgram.R:24:3'): CSP conservative ───────────────────────────────
Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/qs/libs/x64/qs.dll':
LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden.
Backtrace:
▆
1. └─base::loadNamespace(x) at test_pgram.R:24:3
2. └─base::library.dynam(lib, package, package.lib)
3. └─base::dyn.load(file, DLLpath = DLLpath, ...)
4. └─base (local) inDL(x, as.logical(local), as.logical(now), ...)
── Error ('test_pgram.R:33:3'): CSP standard ───────────────────────────────────
Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/qs/libs/x64/qs.dll':
LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden.
Backtrace:
▆
1. └─base::loadNamespace(x) at test_pgram.R:33:3
2. └─base::library.dynam(lib, package, package.lib)
3. └─base::dyn.load(file, DLLpath = DLLpath, ...)
4. └─base (local) inDL(x, as.logical(local), as.logical(now), ...)
── Error ('test_pgram.R:41:3'): FFT ────────────────────────────────────────────
Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/qs/libs/x64/qs.dll':
LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden.
Backtrace:
▆
1. └─base::loadNamespace(x) at test_pgram.R:41:3
2. └─base::library.dynam(lib, package, package.lib)
3. └─base::dyn.load(file, DLLpath = DLLpath, ...)
4. └─base (local) inDL(x, as.logical(local), as.logical(now), ...)
── Error ('test_pgram.R:49:3'): Lomb-Scargle ───────────────────────────────────
Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/qs/libs/x64/qs.dll':
LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden.
Backtrace:
▆
1. └─base::loadNamespace(x) at test_pgram.R:49:3
2. └─base::library.dynam(lib, package, package.lib)
3. └─base::dyn.load(file, DLLpath = DLLpath, ...)
4. └─base (local) inDL(x, as.logical(local), as.logical(now), ...)
── Error ('test_spectr.R:15:3'): spectr CSP greedy ─────────────────────────────
Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/qs/libs/x64/qs.dll':
LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden.
Backtrace:
▆
1. └─base::loadNamespace(x) at test_spectr.R:15:3
2. └─base::library.dynam(lib, package, package.lib)
3. └─base::dyn.load(file, DLLpath = DLLpath, ...)
4. └─base (local) inDL(x, as.logical(local), as.logical(now), ...)
── Error ('test_spectr.R:24:3'): spectr CSP conservative ───────────────────────
Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/qs/libs/x64/qs.dll':
LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden.
Backtrace:
▆
1. └─base::loadNamespace(x) at test_spectr.R:24:3
2. └─base::library.dynam(lib, package, package.lib)
3. └─base::dyn.load(file, DLLpath = DLLpath, ...)
4. └─base (local) inDL(x, as.logical(local), as.logical(now), ...)
── Error ('test_spectr.R:33:3'): spectr CSP standard ───────────────────────────
Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/qs/libs/x64/qs.dll':
LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden.
Backtrace:
▆
1. └─base::loadNamespace(x) at test_spectr.R:33:3
2. └─base::library.dynam(lib, package, package.lib)
3. └─base::dyn.load(file, DLLpath = DLLpath, ...)
4. └─base (local) inDL(x, as.logical(local), as.logical(now), ...)
── Error ('test_spectr.R:42:3'): spectr Lomb-Scargle ───────────────────────────
Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/qs/libs/x64/qs.dll':
LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden.
Backtrace:
▆
1. └─base::loadNamespace(x) at test_spectr.R:42:3
2. └─base::library.dynam(lib, package, package.lib)
3. └─base::dyn.load(file, DLLpath = DLLpath, ...)
4. └─base (local) inDL(x, as.logical(local), as.logical(now), ...)
── Error ('test_spectr.R:51:3'): spectr FFT ────────────────────────────────────
Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/qs/libs/x64/qs.dll':
LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden.
Backtrace:
▆
1. └─base::loadNamespace(x) at test_spectr.R:51:3
2. └─base::library.dynam(lib, package, package.lib)
3. └─base::dyn.load(file, DLLpath = DLLpath, ...)
4. └─base (local) inDL(x, as.logical(local), as.logical(now), ...)
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 3 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 14