Last updated on 2026-01-20 12:49:42 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 13 | ||
| mlr | 2 | 11 | |
| mlr3pipelines | 3 | 10 | |
| paradox | 13 | ||
| ParamHelpers | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 10
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [109s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-20 23:13:15.323444: Isomap START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.323702: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.326737: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.332989: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 23:13:15.344694: Isomap START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.344866: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.347044: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.352957: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 23:13:15.360625: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.360788: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.365727: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.381157: embedding
> test_pipeop_isomap.R: 2026-01-20 23:13:15.381592: DONE
> test_pipeop_isomap.R: 2026-01-20 23:13:15.387462: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.387612: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.391858: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.407564: embedding
> test_pipeop_isomap.R: 2026-01-20 23:13:15.407944: DONE
> test_pipeop_isomap.R: 2026-01-20 23:13:15.428465: Isomap START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.428597: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.43293: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.466258: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 23:13:15.475069: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.475257: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.490579: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.568134: embedding
> test_pipeop_isomap.R: 2026-01-20 23:13:15.569379: DONE
> test_pipeop_isomap.R: 2026-01-20 23:13:15.604822: Isomap START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.604961: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.607249: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.61336: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 23:13:15.620913: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.621085: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.625684: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.640637: embedding
> test_pipeop_isomap.R: 2026-01-20 23:13:15.641072: DONE
> test_pipeop_isomap.R: 2026-01-20 23:13:15.684825: Isomap START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.684977: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.687158: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.693137: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 23:13:15.705493: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.705684: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.710267: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.725082: embedding
> test_pipeop_isomap.R: 2026-01-20 23:13:15.725477: DONE
> test_pipeop_isomap.R: 2026-01-20 23:13:15.744644: Isomap START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.744777: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.747007: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.753279: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 23:13:15.766297: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.766502: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.770959: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.785922: embedding
> test_pipeop_isomap.R: 2026-01-20 23:13:15.786353: DONE
> test_pipeop_isomap.R: 2026-01-20 23:13:15.805493: Isomap START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.805617: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.807954: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.814114: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 23:13:15.834106: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.834343: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.838601: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.853597: embedding
> test_pipeop_isomap.R: 2026-01-20 23:13:15.854015: DONE
> test_pipeop_isomap.R: 2026-01-20 23:13:15.873294: Isomap START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.873428: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.875754: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.881805: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 23:13:15.893852: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.894031: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.899357: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.914552: embedding
> test_pipeop_isomap.R: 2026-01-20 23:13:15.914973: DONE
> test_pipeop_isomap.R: 2026-01-20 23:13:15.935624: Isomap START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.935758: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.938291: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.944496: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 23:13:15.974014: Isomap START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.974198: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.976504: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.98276: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 23:13:15.989173: Isomap START
> test_pipeop_isomap.R: 2026-01-20 23:13:15.989294: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 23:13:15.991561: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 23:13:15.997586: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [323s/406s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-20 03:15:00.955569: Isomap START
> test_pipeop_isomap.R: 2026-01-20 03:15:00.956118: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:00.985485: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:01.053184: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 03:15:01.181223: Isomap START
> test_pipeop_isomap.R: 2026-01-20 03:15:01.181517: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:01.208463: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:01.245583: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 03:15:01.328214: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 03:15:01.328678: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:01.362889: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:01.489973: embedding
> test_pipeop_isomap.R: 2026-01-20 03:15:01.491087: DONE
> test_pipeop_isomap.R: 2026-01-20 03:15:01.560077: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 03:15:01.56038: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:01.597745: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:01.718451: embedding
> test_pipeop_isomap.R: 2026-01-20 03:15:01.741276: DONE
> test_pipeop_isomap.R: 2026-01-20 03:15:01.987439: Isomap START
> test_pipeop_isomap.R: 2026-01-20 03:15:01.987741: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:02.021334: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:02.307087: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 03:15:02.386216: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 03:15:02.386633: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:02.474609: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:03.126507: embedding
> test_pipeop_isomap.R: 2026-01-20 03:15:03.130249: DONE
> test_pipeop_isomap.R: 2026-01-20 03:15:03.491818: Isomap START
> test_pipeop_isomap.R: 2026-01-20 03:15:03.492126: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:03.539511: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:03.581523: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 03:15:03.658564: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 03:15:03.681769: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:03.715744: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:03.815911: embedding
> test_pipeop_isomap.R: 2026-01-20 03:15:03.817141: DONE
> test_pipeop_isomap.R: 2026-01-20 03:15:04.135094: Isomap START
> test_pipeop_isomap.R: 2026-01-20 03:15:04.135389: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:04.164803: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:04.207933: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 03:15:04.326513: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 03:15:04.326949: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:04.413797: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:04.514006: embedding
> test_pipeop_isomap.R: 2026-01-20 03:15:04.535755: DONE
> test_pipeop_isomap.R: 2026-01-20 03:15:04.696151: Isomap START
> test_pipeop_isomap.R: 2026-01-20 03:15:04.696448: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:04.725307: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:04.782257: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 03:15:04.889871: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 03:15:04.890307: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:04.95713: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:05.058867: embedding
> test_pipeop_isomap.R: 2026-01-20 03:15:05.081527: DONE
> test_pipeop_isomap.R: 2026-01-20 03:15:05.268169: Isomap START
> test_pipeop_isomap.R: 2026-01-20 03:15:05.268463: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:05.297498: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:05.339476: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 03:15:05.473573: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 03:15:05.47402: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:05.516402: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:05.638716: embedding
> test_pipeop_isomap.R: 2026-01-20 03:15:05.639841: DONE
> test_pipeop_isomap.R: 2026-01-20 03:15:05.818977: Isomap START
> test_pipeop_isomap.R: 2026-01-20 03:15:05.81928: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:05.845717: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:05.88176: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 03:15:06.027564: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-20 03:15:06.02799: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:06.069011: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:06.21747: embedding
> test_pipeop_isomap.R: 2026-01-20 03:15:06.218713: DONE
> test_pipeop_isomap.R: 2026-01-20 03:15:06.443227: Isomap START
> test_pipeop_isomap.R: 2026-01-20 03:15:06.443524: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:06.506586: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:06.565186: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 03:15:06.777308: Isomap START
> test_pipeop_isomap.R: 2026-01-20 03:15:06.778607: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:06.786446: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:06.854828: Classical Scaling
> test_pipeop_isomap.R: 2026-01-20 03:15:06.91286: Isomap START
> test_pipeop_isomap.R: 2026-01-20 03:15:06.91316: constructing knn graph
> test_pipeop_isomap.R: 2026-01-20 03:15:06.941058: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-20 03:15:06.97852: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [290s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-16 16:16:45.815526: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.816596: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:45.830182: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:45.85286: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:45.924012: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.924484: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:45.932784: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:45.954529: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:45.98782: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.988521: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.012046: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.061949: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.063834: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.115601: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.116369: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.141883: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.192334: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.194562: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.309377: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.31006: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.334583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.447183: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:46.491673: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.492318: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.534133: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.734709: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.739824: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.956391: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.956832: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.963703: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.979221: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.01364: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.01425: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.029205: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.065929: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.06718: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.259106: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.25977: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.270811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.293168: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.3869: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.38753: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.402279: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.437225: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.43836: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.541812: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.542424: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.554538: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.577187: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.654275: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.655185: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.679313: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.729601: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.731512: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.830133: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.830653: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.841836: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.86317: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.935614: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.936472: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.958377: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.998494: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:48.000015: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:48.124603: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.125084: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.134392: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.149473: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.212644: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.213604: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.23658: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.285648: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:48.287417: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:48.423782: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.424429: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.436787: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.458976: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.576937: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.577575: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.588312: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.60597: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.644312: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.645016: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.656383: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.679226: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13